Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., excinuclease ABC subunit UvrC from Dickeya dadantii 3937

 Score =  793 bits (2047), Expect = 0.0
 Identities = 394/611 (64%), Positives = 482/611 (78%), Gaps = 4/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           M+ +FD+  FLKTVT+QPGVYRMY+A+  VIYVGKAKDLKKRL+SYFR  + S KT+ALV
Sbjct: 1   MTERFDAQAFLKTVTSQPGVYRMYDADDTVIYVGKAKDLKKRLSSYFRAQVASRKTEALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
            +I +IDVT+THTETEAL+LEHNYIK+Y P+YNVLLRDDKSYP IFLS   HPRLS HRG
Sbjct: 61  KSIRQIDVTITHTETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLSGDTHPRLSVHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AK  +GEYFGP+P+  AVRETL L+QK+FP+RQCE++VY NR+RPCL YQIGRC GPCV 
Sbjct: 121 AKHAKGEYFGPFPNGNAVRETLMLLQKLFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVN 180

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+S++ YQ  V Y+RLFL GKD QVL+ L+E+ME ASRELRFE+AA+ RDQIQA+RRV 
Sbjct: 181 GLVSEEEYQRQVEYVRLFLLGKDQQVLTRLIERMETASRELRFEEAARIRDQIQAVRRVT 240

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           E+QFVS D  +DLDV+G A E G+AC+H+L IRQGKVLGSRS+FPK+P  T   EV ++F
Sbjct: 241 EKQFVSGDG-DDLDVIGVAFEAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELAEVVQTF 299

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           + Q+YL  S +R++P+ I+L+  L E  + L  +++E AGRK+     P G R RYLKLA
Sbjct: 300 VGQFYLQGSVSRTLPSDILLDFSLPEH-QLLAESLTEQAGRKIQIQTRPRGDRARYLKLA 358

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMDAITRMECFDISHTMGESTMASCVVFNQE 420
            TNA TA+TTK++ + T+ QR  AL   LG++ I RMECFDISHTMGE T+ASCVVFN +
Sbjct: 359 RTNAHTALTTKLSQQSTVQQRLAALASVLGIEKINRMECFDISHTMGEQTVASCVVFNAD 418

Query: 421 GPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEI 480
           GPL+ EYRRYNI GIT GDDYAAM QVL RRY K +D  K+PD+I IDGGKGQL +A E+
Sbjct: 419 GPLRSEYRRYNIAGITPGDDYAAMNQVLRRRYGKSIDEGKVPDVIVIDGGKGQLAQAKEV 478

Query: 481 ISSCWQDWPK-YPKIIGIAKGVTRKPGLETL-ITIDGDEFHLPSDAPALHLIQHIRDESH 538
            +S    W K  P ++G+AKG  RK GLETL     G+   LP+D+PALH+IQHIRD+SH
Sbjct: 479 FASLQVPWDKSRPLLLGVAKGSDRKAGLETLFFEATGEGVALPADSPALHVIQHIRDDSH 538

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
           NHAI+GHR QR K + TS+LE IEGVGPKRRQ LLKY+GG+Q L  ASVE+IA VPGISH
Sbjct: 539 NHAISGHRKQRAKVKSTSSLETIEGVGPKRRQMLLKYMGGLQPLMNASVEDIANVPGISH 598

Query: 599 ALAENIYQALK 609
           ALAE I+ ALK
Sbjct: 599 ALAEKIFHALK 609