Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Excinuclease ABC subunit C from Alteromonas macleodii MIT1002

 Score =  680 bits (1755), Expect = 0.0
 Identities = 345/611 (56%), Positives = 459/611 (75%), Gaps = 14/611 (2%)

Query: 5   FDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIA 64
           FDSA FLK +T+QPGVYRMYN++ EVIYVGKAK+LKKR++SYFR NLD+ KT++LVS IA
Sbjct: 4   FDSAAFLKNLTSQPGVYRMYNSQEEVIYVGKAKNLKKRVSSYFRSNLDNAKTRSLVSQIA 63

Query: 65  KIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKR 124
            +DVTV ++ETEA +LE+N+IK+Y P+YNV++RDDKSYP+IFLS H+HPRLS HRG +K+
Sbjct: 64  NMDVTVVNSETEAFLLENNFIKKYKPRYNVVMRDDKSYPFIFLSDHEHPRLSFHRGPQKK 123

Query: 125 RGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLIS 184
           +GEYFGPYP + +VRE+L  +Q+IFPVRQCED+ Y  R+RPCL YQ+ RC+ PCV+G +S
Sbjct: 124 KGEYFGPYPSAWSVRESLRSMQRIFPVRQCEDSYYRARSRPCLQYQMQRCSAPCVEGYVS 183

Query: 185 DQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQF 244
           D+ Y+E V++ RLFL+GK+ QV+  LVEKME AS  L FE AA+ RDQI A+R+VQE+Q+
Sbjct: 184 DEEYKEQVNFARLFLKGKNQQVIGGLVEKMEAASEALNFEAAARYRDQINALRKVQERQW 243

Query: 245 VSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQY 304
           V+  + +++DV GFA +  +ACI ++ IR+G++LGS+++FPK+P+   + EVFESF  Q+
Sbjct: 244 VA-GTQDEMDVFGFAFKGNMACIQVMFIREGQLLGSKAYFPKVPNTADEQEVFESFFLQF 302

Query: 305 YLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNA 364
           YL+ ++   IP +I+L   LT+E     +  SE AG KV F       + +YL+LA +NA
Sbjct: 303 YLAGNKV--IPKQIVLGNTLTDEDAIADVLASE-AGHKVQFFKGAREEKRKYLQLAQSNA 359

Query: 365 LTAITTKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQEGPL 423
            TA+  + + + ++  R+  L+  L +D  I RMECFDISHT G+ T+ASCVVF +EGP 
Sbjct: 360 QTALDAQYSQQKSVFARYLDLEAALEVDTPIQRMECFDISHTSGQQTVASCVVFKREGPH 419

Query: 424 KQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEIISS 483
           K +YRRYNI GIT GDDYAAMAQ L+RRY    +  KIPD++ IDGGKGQL +A     +
Sbjct: 420 KSDYRRYNIEGITPGDDYAAMAQALKRRYKSVKEVQKIPDLLLIDGGKGQLAQA----EA 475

Query: 484 CWQDWP--KYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSD--APALHLIQHIRDESHN 539
            ++DWP  K P ++G+AKG TRKPGLETLI + G    LP D  +P LHLIQHIRDESH 
Sbjct: 476 FFEDWPHDKKPMLLGVAKGTTRKPGLETLI-LAGSHQVLPMDSHSPGLHLIQHIRDESHR 534

Query: 540 HAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHA 599
            AI GHR +R K + TS+LE I G+G KRRQ LLK++GG+Q LK+AS +EI+ VPGIS  
Sbjct: 535 FAITGHRNRRQKVKTTSSLESIPGIGAKRRQTLLKFMGGLQGLKKASKDEISNVPGISPE 594

Query: 600 LAENIYQALKQ 610
           LAE IY  L Q
Sbjct: 595 LAETIYDHLHQ 605