Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., DNA polymerase II from Pseudomonas fluorescens SBW25

 Score =  802 bits (2071), Expect = 0.0
 Identities = 413/793 (52%), Positives = 544/793 (68%), Gaps = 14/793 (1%)

Query: 1   MKIEQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEV-MRIAA 59
           M ++QGFVLTRH RD    T++  WLAT  GP  + +  +  V F+ ++  + +   +  
Sbjct: 1   MDLQQGFVLTRHWRDTPTGTEVSFWLATDQGPRFIRLPVQTSVMFVPEAHRKPLDWLLKG 60

Query: 60  ELSITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLME 119
           E  I   L PL L  F  +P+   Y    R +  + ++L  A + + E D+R  +R++ME
Sbjct: 61  ERDI--ELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMME 118

Query: 120 RFIQGSIEFTGQITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLLYSIGLDSPM 179
           RFI   + F G     G     Q       DY P L +VSLDIE + +G LYSI L+   
Sbjct: 119 RFITAPVWFGGTPDTSGVLCDAQMKPAP--DYRPPLKLVSLDIETTAQGDLYSIALEGCG 176

Query: 180 DSRVIMIGQPEPAET---PIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHK 236
           + +V M+G P   +     + + +   QLL+ L  W  Q DPD IIGW+VV FD R+LH+
Sbjct: 177 ERQVYMLGPPNKTDAVDFKLDYCDTRAQLLERLNEWLAQHDPDAIIGWNVVQFDLRVLHE 236

Query: 237 RAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESV 296
            A+   + L +GR  +P  +R        F +  GR+++DGI+ L++AT+ F S+SLE+V
Sbjct: 237 HAQRLNVPLMLGRGDEPMAWREHGSRNHYFAAAAGRLIIDGIEALRSATWSFESFSLENV 296

Query: 297 SQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRS 356
           +Q LLGEGK I   + RMDEIN+MF  DKP+LARYNL+DC LV +IF  T LL F ++R+
Sbjct: 297 AQTLLGEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERA 356

Query: 357 RLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDSVL 416
            +TG+  DR GGSVAAFT+LY+P +HR G+VAPNL  +   ASPGG+VMDS PGLY+SVL
Sbjct: 357 SVTGLPADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVL 416

Query: 417 VLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIEKL 476
           VLD+KSLYPSIIRSFLIDP+GLIEGLK P       +V GFRG +F RT+H LP ++ ++
Sbjct: 417 VLDYKSLYPSIIRSFLIDPVGLIEGLKYP---DDSDSVEGFRGARFSRTRHCLPAIVARV 473

Query: 477 WAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRL 536
              R+ AKR      SQA+KIIMN+FYGVLGSSGCRFFD RLASSITMRGH+IM QT+ L
Sbjct: 474 SEGREVAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTREL 533

Query: 537 IEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILEL 596
           +EA+GY+VIYGDTDSTFV LG  +SQ+EA  IG  LV+ +N WW EHL   + L S LEL
Sbjct: 534 VEAQGYEVIYGDTDSTFVWLGSAHSQEEASRIGRGLVQHVNDWWREHLHTTFGLQSALEL 593

Query: 597 EYETHYRRFLMPTIRGSETGSKKRYAGL--KGDGDNEQLIFKGLESARTDWTPLAQRFQH 654
           +YETH+ RFLMPTIRG+E GSKKRYAGL  + DG +E +++KGLE+ R+DW+PLA+RFQ 
Sbjct: 594 QYETHFTRFLMPTIRGAEEGSKKRYAGLVVRSDG-SEDMVYKGLETVRSDWSPLARRFQQ 652

Query: 655 QLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMAD 714
           +LYQ IFH Q  + YIR  V +TL+G+ D+ L+Y+KRLRRRL +Y++NVPP VRAAR+AD
Sbjct: 653 ELYQRIFHRQPHQDYIRDYVRRTLSGEFDELLIYRKRLRRRLDDYERNVPPHVRAARLAD 712

Query: 715 DINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGK 774
           + N +L RP QYQ  G I YVI+VNGPEP E  ++PIDY HY+ +QL+PVADAILPF+  
Sbjct: 713 EYNDRLNRPRQYQRGGWISYVISVNGPEPLEVRQAPIDYDHYVTRQLQPVADAILPFVND 772

Query: 775 QFDELIAPQLGLF 787
            F  L+  Q+GLF
Sbjct: 773 DFSTLVGGQMGLF 785