Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 783 a.a., DNA polymerase II (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  812 bits (2098), Expect = 0.0
 Identities = 422/791 (53%), Positives = 550/791 (69%), Gaps = 17/791 (2%)

Query: 4   EQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQS-ASQEVMRIAAELS 62
           + GF+LTRH RD    T++  WLAT +GP Q T+  +  V FI  S  S+    + AE  
Sbjct: 3   QAGFILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAFIPTSQTSRAASLLQAEKD 62

Query: 63  ITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFI 122
               L PL LR F  QP++  YC T R    + + L +  + + EAD+R  +R+LMERFI
Sbjct: 63  YR--LTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVTVYEADVRPPERYLMERFI 120

Query: 123 QGSIEFTGQITDFGHYRQVQQAKCR-QGDYLPTLNMVSLDIECSEKGLLYSIGLDSPMDS 181
              +   G++ +      ++ A+ +   DY P L  VSLDIE +  G LY IGL+     
Sbjct: 121 TSPVWVDGEMRN----GVIRNARLKPHSDYRPPLKWVSLDIETTRHGELYCIGLEGCGQR 176

Query: 182 RVIMIG----QPEPAETPIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKR 237
            V M+G         +  + +V    QLL+ L AWF + DPDVIIGW+VV FD R+L K 
Sbjct: 177 TVYMLGPANGDDHQLDFELVYVASRPQLLEKLNAWFAEHDPDVIIGWNVVQFDLRMLQKH 236

Query: 238 AEFHKLKLTIGRAQQPSFFRTAS-QTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESV 296
           AE +++ L +GR      +R    +    F    GRV++DGID LK+A ++F S+SLE+V
Sbjct: 237 AERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAV 296

Query: 297 SQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRS 356
           SQELLGEGK+I N  DRMDEI++ F  DKP+LA YNL+DC LV +IF  T ++ F ++R+
Sbjct: 297 SQELLGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMPFLLERA 356

Query: 357 RLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDSVL 416
            + G+ +DR GGSVAAF +LY P++HRAGYVAPNL     +ASPGGYVMDS PGLYDSVL
Sbjct: 357 TINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPLASPGGYVMDSQPGLYDSVL 416

Query: 417 VLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIEKL 476
           VLD+KSLYPSIIR+FLIDP+GL+EG+  P     +H+  GF    F R KH LPE++ ++
Sbjct: 417 VLDYKSLYPSIIRTFLIDPVGLVEGMAQP---DPEHSTEGFLDAWFSREKHCLPEIVSQI 473

Query: 477 WAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRL 536
           W  RDEAKR   K  SQA+KIIMN+FYGVLG++ CRFFD RLASSITMRGH IM QTK L
Sbjct: 474 WHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHAIMRQTKAL 533

Query: 537 IEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILEL 596
           IEA+GY VIYGDTDSTFV L   +S+ +A  IGH LVR +N+WW + L+Q+  LTS LEL
Sbjct: 534 IEAQGYDVIYGDTDSTFVWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQN-LTSALEL 592

Query: 597 EYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNEQLIFKGLESARTDWTPLAQRFQHQL 656
           E+ETH+ RFLMPTIRG++TGSKKRYAGL  +GD+++++FKGLE+ RTDWTPLAQRFQ +L
Sbjct: 593 EFETHFCRFLMPTIRGADTGSKKRYAGLIQEGDSQRMVFKGLETVRTDWTPLAQRFQQEL 652

Query: 657 YQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMADDI 716
           Y  +F  +  + Y+R  +++ +AG+LD QLVY+KRLRR LHEYQ+NVPP VRAAR+AD+ 
Sbjct: 653 YLRVFRNEPYQDYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNVPPHVRAARLADEQ 712

Query: 717 NAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGKQF 776
           N K GRP QYQ RG I+YV TVNGPEP +Y +SP+DY+HY+ +QL+PVA+ ILPF+   F
Sbjct: 713 NLKQGRPAQYQNRGAIKYVWTVNGPEPVDYQQSPLDYEHYLTRQLQPVAEGILPFVEDNF 772

Query: 777 DELIAPQLGLF 787
             L+  QLGLF
Sbjct: 773 ATLLTGQLGLF 783