Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 783 a.a., DNA polymerase II from Escherichia coli ECOR27

 Score =  796 bits (2057), Expect = 0.0
 Identities = 418/794 (52%), Positives = 547/794 (68%), Gaps = 23/794 (2%)

Query: 4   EQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFI---EQSASQEVMRIAAE 60
           + GF+LTRH RD    T++  WLAT +GP Q+T+  +  V FI   +   +Q +++    
Sbjct: 3   QAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQG 62

Query: 61  LSITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMER 120
             +TP    L+L+ F  QP+   YC   R      ++L +  + + EAD+R  +R+LMER
Sbjct: 63  FRLTP----LALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMER 118

Query: 121 FIQGSIEFTGQITDFGHYRQVQQAKCR-QGDYLPTLNMVSLDIECSEKGLLYSIGLDSPM 179
           FI   +   G +    H   +  A+ +   DY P L  VS+DIE +  G LY IGL+   
Sbjct: 119 FITSPVWVEGDM----HNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCG 174

Query: 180 DSRVIMIGQPEPAETP-----IQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLL 234
              V M+G PE  +       +++V     LL+ L AWF   DPDVIIGW+VV FD R+L
Sbjct: 175 QRIVYMLG-PENGDASSLDFELEYVASRPLLLEKLNAWFANHDPDVIIGWNVVQFDLRML 233

Query: 235 HKRAEFHKLKLTIGRAQQPSFFRTAS-QTQQGFISIPGRVVLDGIDTLKTATYHFRSWSL 293
            K AE ++L L +GR      +R    +    F    GR+++DGI+ LK+A ++F S+SL
Sbjct: 234 QKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSL 293

Query: 294 ESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAI 353
           E+V+QELLGEGK+I N  DRMDEI++ F  DKP+LA YNL+DC LV +IF  T ++ F +
Sbjct: 294 ETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVMQIFHKTEIMPFLL 353

Query: 354 QRSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYD 413
           +R+ + G+ +DR GGSVAAF +LY P++HRAGYVAPNL      ASPGGYVMDS PGLYD
Sbjct: 354 ERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYD 413

Query: 414 SVLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMI 473
           SVLVLD+KSLYPSIIR+FLIDP+GL+EG+  P     +H+  GF    F R KH LPE++
Sbjct: 414 SVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQP---DPEHSTEGFLDAWFSREKHCLPEIV 470

Query: 474 EKLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQT 533
             +W  RDEAKR   K  SQA+KIIMN+FYGVLG++ CRFFD RLASSITMRGH+IM QT
Sbjct: 471 TNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQT 530

Query: 534 KRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSI 593
           K LIEA+GY VIYGDTDSTFV L G +S++EA  IG  LV+ +N WW E L Q+  LTS 
Sbjct: 531 KALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRVLVQHVNAWWAETL-QKQRLTSA 589

Query: 594 LELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNEQLIFKGLESARTDWTPLAQRFQ 653
           LELEYETH+ RFLMPTIRG++TGSKKRYAGL  +GD ++++FKGLE+ RTDWTPLAQ+FQ
Sbjct: 590 LELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQ 649

Query: 654 HQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMA 713
            +LY  IF  +  + Y+R  +++ +AG+LD +LVY+KRLRR L EYQ+NVPP VRAAR+A
Sbjct: 650 QELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA 709

Query: 714 DDINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIG 773
           D+ N K GRPLQYQ RGTI+YV T NGPEP +Y +SP+DY+HY+ +QL+PVA+ ILPFI 
Sbjct: 710 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIE 769

Query: 774 KQFDELIAPQLGLF 787
             F  L+  QLGLF
Sbjct: 770 DNFATLMTGQLGLF 783