Pairwise Alignments

Query, 223 a.a., lipoprotein from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., cell envelope biogenesis protein OmpA from Pseudomonas simiae WCS417

 Score =  137 bits (345), Expect = 2e-37
 Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 3   NKTTLLLAAVVAL-SGCQATQRQNATTGETETNA------TTKGALLGVLAGAAVGLATG 55
           ++  L++A  VAL SGC +    + ++    +N       T K   LG LAGA  G A  
Sbjct: 4   SRRLLVVATCVALLSGCASPNPYDGSSQGQASNESGGMSKTAKYGGLGALAGALAGAAI- 62

Query: 56  DDAKERRKHALIGAAGGAAVGGGIGYYFDQQEAELRKALLDSGVQVVRVGENQLMLRMEN 115
            D   R K ALIGA    A   G GYY DQQE +LR+++ ++GV+V R G+ Q+ L M  
Sbjct: 63  -DHNNRGKGALIGAVVAGAGAAGYGYYADQQEKKLRESMANTGVEVQRQGD-QIKLIMPG 120

Query: 116 GIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGSDTTNQVLSEKRAESV 175
            I F +NS  + S  +  L  +A  L ++   ++ I G+TDSTGS   N  LS++RA+SV
Sbjct: 121 NITFATNSDAISSSFYLPLNNLANSLKQFNQNTIQIVGYTDSTGSRQLNMDLSQRRAQSV 180

Query: 176 RSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPL 222
            ++L SQGV      ARG G   P+ SN    GRA NRRVE+ + P+
Sbjct: 181 ANYLTSQGVNGANLSARGAGPDNPIASNADVNGRAQNRRVEVNLGPI 227