Pairwise Alignments

Query, 223 a.a., lipoprotein from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., porin from Agrobacterium fabrum C58

 Score =  154 bits (388), Expect = 2e-42
 Identities = 97/223 (43%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 1   MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKE 60
           M+ K  ++      LS C  T   +  TGE + + T  GA +G + GA  GLA G     
Sbjct: 1   MIKKIAIVALCGTYLSACTTT---DPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVG 57

Query: 61  RRKHALIGAAGGAAVGGGIGYYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFT 120
           RR  ALIGA  GA  GG IG Y D QEAELR  L  +GV V R G++ ++L M + I F 
Sbjct: 58  RRNAALIGAGIGALAGGAIGNYMDGQEAELRAQLQGTGVSVTRRGDS-IVLNMPSNITFA 116

Query: 121 SNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGSDTTNQVLSEKRAESVRSFLL 180
           ++  Q+    ++TL  VA +L ++  T + I GHTDSTGS   NQ LSE+RA SV ++L 
Sbjct: 117 TDQDQVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHNQALSERRAASVANYLG 176

Query: 181 SQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK 223
           ++GV   R    G G   P+ SN T++GRA NRRVE+ I PLK
Sbjct: 177 ARGVDQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLK 219