Pairwise Alignments

Query, 350 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score = 47.8 bits (112), Expect = 5e-10
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 39  QLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGV 98
           + A++ +PQAQ+ L    Q G     +   A  WF Q+AE     A+  +   Y  G GV
Sbjct: 223 EAAKQGDPQAQFNLGNMIQQGRGVESSAEVAAKWFKQAAEQGDAGAIFALGALYEAGTGV 282

Query: 99  EKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQ-HPTAIAALDLAEIWYRVNANQDPESEQ 157
           E+D +QA     + A  G   A   LA    Q   T     + A +  R      PE++ 
Sbjct: 283 ERDEIQAVELYRQAADQGLALALHNLANMLRQGRGTDADPFEAAMLCRRAAEQGLPEAQY 342

Query: 158 GYARLL 163
            YA +L
Sbjct: 343 NYAAML 348



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 29/99 (29%), Positives = 42/99 (42%)

Query: 31  ADDVTRLTQLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVAN 90
           A+ V   T  A+  + + QY L + Y  G    Q+   A  WF ++A+   P A   + N
Sbjct: 179 AEAVRLYTLAAKAGDARGQYSLGVMYDLGLGVAQSNAHALKWFREAAKQGDPQAQFNLGN 238

Query: 91  AYLTGQGVEKDPLQAQYWLIKLALAGNPQAGTTLAKWYE 129
               G+GVE     A  W  + A  G+  A   L   YE
Sbjct: 239 MIQQGRGVESSAEVAAKWFKQAAEQGDAGAIFALGALYE 277



 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 34  VTRLTQLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYL 93
           VTR   LA E +P AQ++L   Y+ G    ++L+EA  W ++SA   +  AMA +     
Sbjct: 8   VTRYRSLALENDPVAQFKLGDLYRLGYQVKRDLDEAVVWLVRSARQGNADAMALLKKMAA 67

Query: 94  TGQGVEK 100
            G  V +
Sbjct: 68  DGVDVRR 74



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 27/120 (22%), Positives = 45/120 (37%)

Query: 32  DDVTRLTQLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANA 91
           DD   L     + +  A   L   Y+ G     +  EA   +  +A+         +   
Sbjct: 144 DDPVALRAAVDKGDLAAMVALGNAYREGKGVAVDPAEAVRLYTLAAKAGDARGQYSLGVM 203

Query: 92  YLTGQGVEKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNANQ 151
           Y  G GV +    A  W  + A  G+PQA   L    +Q     ++ ++A  W++  A Q
Sbjct: 204 YDLGLGVAQSNAHALKWFREAAKQGDPQAQFNLGNMIQQGRGVESSAEVAAKWFKQAAEQ 263



 Score = 30.8 bits (68), Expect = 6e-05
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 80  NHPPAMAQVANAYLTGQGVEKDPLQAQYWLIKLALAGNPQAGTTLAK 126
           N P A  ++ + Y  G  V++D  +A  WL++ A  GN  A   L K
Sbjct: 18  NDPVAQFKLGDLYRLGYQVKRDLDEAVVWLVRSARQGNADAMALLKK 64



 Score = 30.8 bits (68), Expect = 6e-05
 Identities = 24/81 (29%), Positives = 35/81 (43%)

Query: 39  QLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGV 98
           Q A +    A + LA   + G  T  +  EA     ++AE   P A    A     G GV
Sbjct: 295 QAADQGLALALHNLANMLRQGRGTDADPFEAAMLCRRAAEQGLPEAQYNYAAMLALGLGV 354

Query: 99  EKDPLQAQYWLIKLALAGNPQ 119
           EK+   A  W  + A +G+P+
Sbjct: 355 EKNEDAAIRWFRRAAKSGDPR 375



 Score = 30.4 bits (67), Expect = 8e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 33  DVTRLTQLAQEQN-PQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQ 87
           +   L + A EQ  P+AQY  A     G    +N + A  WF ++A+   P   AQ
Sbjct: 324 EAAMLCRRAAEQGLPEAQYNYAAMLALGLGVEKNEDAAIRWFRRAAKSGDPRGEAQ 379