Pairwise Alignments

Query, 350 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 41  AQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEK 100
           AQ+ +  A   L    +  +    +  +A  W+ + AE +H  A   +   Y +G GVE+
Sbjct: 95  AQQGHRHAFNTLGWVQEGETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQ 154

Query: 101 DPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNANQDPESEQ--- 157
           +  QA YW  + AL G+  +   LA  Y         L LA +WY+ +A Q+    Q   
Sbjct: 155 NDTQALYWFKQAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQM 214

Query: 158 GYARLLEQKFNQQRERQL 175
           GY   + +   Q  ++ +
Sbjct: 215 GYCYYIGKGIKQDYQQAI 232



 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 34  VTRLTQLAQEQNPQAQYQLALTYQTGSSTPQNLNE-AFYWFLQSAELNHPPAMAQVANAY 92
           + +LT+LAQ  N +AQY L   Y          ++ +FYW  Q+AE  H  A   +   Y
Sbjct: 15  LAQLTELAQSGNSEAQYILGRLYNDERIDGSEEDKLSFYWLQQAAEQGHCEAQYWLGLRY 74

Query: 93  LTGQGVEKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAE--IWYRVNAN 150
                  KD   A +W  K A  G+  A  TL  W ++  T +A  D A+   WYR  A 
Sbjct: 75  KDTPTDMKDNTLALFWSEKAAQQGHRHAFNTLG-WVQEGETGMAP-DYAQAVAWYRKGAE 132

Query: 151 Q 151
           Q
Sbjct: 133 Q 133



 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 28/106 (26%), Positives = 43/106 (40%)

Query: 41  AQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEK 100
           A +++  +QYQ+   Y  G    Q+  +A YWF ++A+     A   +   Y  G GVE+
Sbjct: 203 ALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCGHGVEQ 262

Query: 101 DPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYR 146
           +   A  W  K A   N      L   Y         L  A  W++
Sbjct: 263 NYSLALEWFHKSAECNNSSGWYNLGCMYRDGHGTAQDLQQALYWFK 308



 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 31/111 (27%), Positives = 51/111 (45%)

Query: 39  QLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGV 98
           Q A + +  +Q +LA  Y  G    +NL+ A  W+ +SA      +  Q+   Y  G+G+
Sbjct: 165 QAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGI 224

Query: 99  EKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNA 149
           ++D  QA YW  K A  G+  A  ++   Y+          LA  W+  +A
Sbjct: 225 KQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSA 275



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 23/76 (30%), Positives = 32/76 (42%)

Query: 41  AQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEK 100
           A + +  A   +   Y+ G    QN + A  WF +SAE N+      +   Y  G G  +
Sbjct: 239 ADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAECNNSSGWYNLGCMYRDGHGTAQ 298

Query: 101 DPLQAQYWLIKLALAG 116
           D  QA YW  K    G
Sbjct: 299 DLQQALYWFKKAQPTG 314