Pairwise Alignments

Query, 350 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 32/91 (35%), Positives = 48/91 (52%)

Query: 39  QLAQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGV 98
           Q A + +  AQ  LA  Y+ G    QN   A +W+L+SA+  +  A  Q+A  Y  G+GV
Sbjct: 161 QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGV 220

Query: 99  EKDPLQAQYWLIKLALAGNPQAGTTLAKWYE 129
           ++D  QA YW +K A  G+  A   +   Y+
Sbjct: 221 DQDYKQAMYWYLKAAAQGSVGAYVNIGYMYK 251



 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 41  AQEQNPQAQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEK 100
           AQ+ N  AQ+Q+A  Y  G    Q+  +A YW+L++A      A   +   Y  GQGVEK
Sbjct: 199 AQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEK 258

Query: 101 DPLQAQYWLIKLALAGNPQAGTTLAKWY---EQHPTAI-AALDL 140
           D   A  W  K A   +  A   LA  Y   E  P  +  ALDL
Sbjct: 259 DYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDL 302



 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 39  QLAQEQNPQ-AQYQLALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQG 97
           Q+A E     AQ  L   Y+ G+   ++   AF+W+ Q+A   H  A   +A+ Y  G+G
Sbjct: 124 QIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKG 183

Query: 98  VEKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNANQ 151
           V ++   A +W +K A  GN  A   +A  Y            A  WY   A Q
Sbjct: 184 VAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQ 237



 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 34  VTRLTQLAQEQNPQAQYQLALTYQTGSSTPQNLNE-AFYWFLQSAELNHPPAMAQVANAY 92
           +  + + A++ + +AQY +   Y   S+     +E AFYW   +AE  H  A   +   Y
Sbjct: 13  IDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGHCEAQYSLGQKY 72

Query: 93  LTGQGVEKDPLQAQYWLIKLALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNANQD 152
              +   KD  QA +WL K AL G+  A   L  W      A    + A +WY++ A   
Sbjct: 73  TEDKSRHKDNEQAIFWLKKAALQGHTFASNALG-WTLDRGEAPNYKE-AVVWYQIAA--- 127

Query: 153 PESEQGYAR 161
            ES   YA+
Sbjct: 128 -ESGMSYAQ 135



 Score = 46.6 bits (109), Expect = 9e-10
 Identities = 31/99 (31%), Positives = 39/99 (39%)

Query: 53  ALTYQTGSSTPQNLNEAFYWFLQSAELNHPPAMAQVANAYLTGQGVEKDPLQAQYWLIKL 112
           AL +        N  EA  W+  +AE     A   +   Y  G GV KD   A +W  + 
Sbjct: 103 ALGWTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQA 162

Query: 113 ALAGNPQAGTTLAKWYEQHPTAIAALDLAEIWYRVNANQ 151
           AL G+  A   LA  YE          LA  WY  +A Q
Sbjct: 163 ALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQ 201