Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., ATP-binding/permease protein CydD from Xanthobacter sp. DMC5

 Score =  336 bits (862), Expect = 1e-96
 Identities = 206/576 (35%), Positives = 311/576 (53%), Gaps = 19/576 (3%)

Query: 6   QRSLNLWLKQQSKLAKRWLAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIPH 65
           ++ L+ +L      A+  L  ++     + L ++AQA L+A I+  ++        L  H
Sbjct: 27  RKRLSAFLSGFRGTARADLGRSLAASAATGLLVIAQAFLVARIIDAVLFRH---ETLSSH 83

Query: 66  FFGLAALIA---VRALCSWGREIAGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSW 122
              LA L+    +R    W  E  GF    ++ R +R  +LD++  +GP  +     G  
Sbjct: 84  GLELAVLVGAILLRVGAVWASEHFGFAAAAKVMRALRSRLLDRVEAIGPVGLAEARTGEL 143

Query: 123 AALMLEQVENMHDFFARYLPQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMAL 182
            A + E V  +  +++RY+P   L+V++P  +L   FP +W +GLI L TAP +P+FM L
Sbjct: 144 VAALAEGVRAVEPYYSRYIPASVLAVMLPVAVLVAAFPFDWVSGLILLATAPFIPVFMIL 203

Query: 183 VGIKAADASRKNFKALQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDV 242
           +G      ++K ++ L R+SGH  D +Q L T++ F+        +   ++ +R  TM V
Sbjct: 204 IGKGTEALNQKQWRRLARMSGHLLDAVQGLATLKAFNAAGRMVTEVATVADDYRRDTMAV 263

Query: 243 LRIAFLSSAVLEFFTSISIALTAVYFGFSYI-GELNFGYYGASVTLFAGLFVLILAPEFY 301
           LR+AFLSSAVLEFF ++SIAL A++ GF  + GE+ F         F GLFVL+LAPEFY
Sbjct: 264 LRVAFLSSAVLEFFATVSIALIAIFIGFRLLWGEMLF---------FPGLFVLLLAPEFY 314

Query: 302 QPLRDLGTYYHAKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIEIIANDLVVLSPQ 361
            PLR +GT YHA+  A+GAAE +V   +        G   L   + I I   D+ +  P 
Sbjct: 315 APLRAMGTAYHARMEAIGAAERLVALEEMPALAESGGATPLPGPEAISIRFEDVRLAFPD 374

Query: 362 GKRLAGPLSFTLQSGKTTALVGPSGAGKTSLINTILGFM-PYQGSLTINGIELRELDHAQ 420
           G+     +SFT+ SG+T ALVGPSGAGK+S+++  LGF+ P  G + +NG+ L ELD A 
Sbjct: 375 GRVALDGVSFTVHSGETVALVGPSGAGKSSILSLALGFVRPTSGRVLVNGVPLAELDLAD 434

Query: 421 WRQTISWVGQNPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVE--QQGLDYPIS 478
            R+ I++V Q P L  GT+  N+  G+      ++ + +  A   + V     GL   + 
Sbjct: 435 VRRRIAYVPQRPRLFAGTLATNIAPGEATPDPARLVRAVADAGLADVVAALPGGLASDVG 494

Query: 479 DRSAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFV 538
           +  AGLS GQA RLA+ARA  +     +LDEPTA LD  SE  V   L+  +  RT L  
Sbjct: 495 EGGAGLSGGQAHRLAVARAFYRAAPLVVLDEPTAHLDRESEADVQAALSRLLASRTGLVA 554

Query: 539 THQLQPLQSVEQILVMENGLLVQAGHFEDLSQQSGL 574
            H+L  +   ++ILV+  G +V  G    L +  GL
Sbjct: 555 AHRLASVAGADRILVLAAGRIVTEGTPAHLLRHGGL 590