Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 1191 a.a., Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 1 / Heterodimeric efflux ABC transporter, permease/ATP-binding subunit 2 from Variovorax sp. SCN45

 Score =  200 bits (509), Expect = 2e-55
 Identities = 155/598 (25%), Positives = 278/598 (46%), Gaps = 39/598 (6%)

Query: 24  LAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIPHFFGLAALIAVRALCSWGR 83
           +A  + LG+L+    +A+   L  +L ++      K  + P      A++ +RAL    R
Sbjct: 3   MAGGIFLGLLALAAGIARYVFLGQLLARVFDAAPVKDWIAPAACA-GAMVLLRALFDHLR 61

Query: 84  EIAGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQ 143
            +   R   ++++ +R  + D++  LGPA+   +  G     +++ VE +  FF +YLPQ
Sbjct: 62  TVQANRSSADVQQALRARLYDRIVALGPAWFANQRTGGVMLTVVDGVEQLQTFFGQYLPQ 121

Query: 144 MSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSG 203
           + ++   PF I AV+   +    L+FL  A         V +    AS    ++L     
Sbjct: 122 VVIAAAAPFAIFAVIAFWDVPTALVFLAAALFALFGPMAVHMLDRRASLARTRSLNEFGE 181

Query: 204 HFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIAL 263
            F D +Q L T++ + +  A  E +   +      T  VL ++ L+  + +   ++  AL
Sbjct: 182 EFLDAVQGLPTLKSYGQGKAWGERLAARARKLSDSTFWVLSVSLLTRGISDLGVALGAAL 241

Query: 264 TAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGAAES 323
                 +              +++ A L VL+   E ++PLRDL +  H   L   AA S
Sbjct: 242 ALTVGAWRVAA--------GDMSVEALLIVLMAGTEIFRPLRDLRSVLHRGMLGQSAAAS 293

Query: 324 IVDFLQT-------EVDTLHSGERHLSDNDDIEIIANDLVVLSPQGKRLAGPLSFTLQSG 376
           I   +         +   +      L    + + ++      SPQ     G LS  + +G
Sbjct: 294 IHALMDAWPLTAAPDAQVVAGAPTRLEPTIEFDGVSFSY---SPQRPAHQG-LSLRIAAG 349

Query: 377 KTTALVGPSGAGKTSLINTILG-FMPYQGSLTINGIELRELDHAQWRQTISWVGQNPLLL 435
           +   +VGPSGAGK++++  +L   +P  G++ + G+++  LD       ++ V Q+  L 
Sbjct: 350 ERVGIVGPSGAGKSTIVRLLLRECVPQAGTIRVGGLDVNRLDTQTLLSHMALVSQDITLF 409

Query: 436 YGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLA 493
           +GTI DN+ LG+ +   EQV    +AA   +F+    QG    I +R   LS GQ QR+A
Sbjct: 410 HGTIDDNLRLGRPDATHEQVRAAARAANIDDFIMALPQGYATAIGERGLQLSGGQRQRVA 469

Query: 494 LARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILV 553
           +ARA+L++    +LDE  +S+D  +E  + + L   +  RT L + H+L  +   ++ LV
Sbjct: 470 IARALLRDAPILILDEALSSVDTENEALIQQALDRLMAGRTTLILAHRLASVIGADRCLV 529

Query: 554 MENGLLVQAGHFEDLSQQSGLFATML-----------AANQAL-----QAANKGDLDA 595
           ++ G +V+ G   +L +Q GL+  ++           AA+ A+     +AA  GD DA
Sbjct: 530 LDQGRVVEQGPHAELMRQQGLYHRLMHEQAVNSFSGAAASAAVPVASPRAAGDGDGDA 587



 Score =  179 bits (453), Expect = 8e-49
 Identities = 160/567 (28%), Positives = 268/567 (47%), Gaps = 34/567 (5%)

Query: 24   LAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIPHFFGLAALIAVRALCSWGR 83
            +A  +G+GVLS+L + A           +  ++    L++    GL     + AL  W  
Sbjct: 634  VAAFIGVGVLSALVVAA-----------IRDDRATSALVV----GLLVAAPLAALFHWLE 678

Query: 84   EIAGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQ 143
                     ++   +R  + DKL  L PAY+  + +G   AL    VE +  F+A  +  
Sbjct: 679  SWLAHAMAYQLLADMRVKLYDKLERLAPAYLLQRRSGDLVALATHDVEMVEYFYAHTIAP 738

Query: 144  MSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFK-ALQRLS 202
              +SVLVP  +L  +   +W   L  LL      L   + G +  DA     + AL  +S
Sbjct: 739  AIVSVLVPLTVLCFLAVYSWPVALA-LLPFLAYALVSPINGRRKIDALGDRARHALGEMS 797

Query: 203  GHFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIA 262
             H  D +Q L  +  F  T          ++  R R +D+L  A LS     F  ++ + 
Sbjct: 798  AHTADTIQGLADLTAFQATGRRRVQFLEIADQCRARRLDML--ADLSRQTAWFEVAMGLG 855

Query: 263  LTAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLA-VGAA 321
              AV    + +G L       S  +   L ++ LA   + P+ ++     ++QLA   AA
Sbjct: 856  GLAV----AAVGALQVAAGALSAGMLPLLVLIALAT--FLPVSEISQV--SRQLADTIAA 907

Query: 322  ESIVDFLQTEVDTLHSGERHLSDNDDIEIIANDLVVLSPQGKR--LAGPLSFTLQSGKTT 379
               +  +  E + +  G     +      +A + V  +  GK       LSF + +G T 
Sbjct: 908  TRRLHVVNNEPEPVADGPLPPPEASHGLSLAFERVSFAYPGKPQDTLRDLSFVVPAGATV 967

Query: 380  ALVGPSGAGKTSLINTILGFM-PYQGSLTINGIELRELDHAQWRQTISWVGQNPLLLYGT 438
            A+VG SGAGK+++ + +L F  P QG++ ++G+++R+L     R+ ++ V Q+  L   T
Sbjct: 968  AVVGASGAGKSTVASLMLRFWDPRQGTVKLDGVDVRQLRLDGLRERVALVTQDTYLFNDT 1027

Query: 439  IRDNVTLGKHNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLALAR 496
            +  N+ L + + + E++   LQ A    FV+   +GL   + +R   LS GQ QR+++AR
Sbjct: 1028 LEGNIRLARPDASREELALALQQAALSAFVQTLPEGLATRVGERGMQLSGGQRQRISIAR 1087

Query: 497  AILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMEN 556
            A L+N    +LDE T+ LD  SE  V   L   ++ RT L V H+L  ++  + ILV+EN
Sbjct: 1088 AFLKNAPVLILDEATSHLDTLSEAQVRGALDVLMRHRTTLVVAHRLSTIRDADLILVLEN 1147

Query: 557  GLLVQAGHFEDLSQQSGLFATMLAANQ 583
            G L +AG  E L ++ G++A  LA++Q
Sbjct: 1148 GALAEAGTHEQLLRRQGVYA-KLASHQ 1173