Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  159 bits (403), Expect = 2e-43
 Identities = 137/559 (24%), Positives = 256/559 (45%), Gaps = 23/559 (4%)

Query: 32  VLSSLFLVAQAAL---LASILHQLIIE---QVDKHLLIPHFFGLAALIAVRALCSWGREI 85
           V+S++ LV  AA    + S+L  L+ E     + + L    F +  L+ VR L  +    
Sbjct: 28  VVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSY 87

Query: 86  AGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQMS 145
                   +   +R+ + +    +   +   +  G   + +    E +    +R L  + 
Sbjct: 88  CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIV 147

Query: 146 LSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSGHF 205
                   +L ++F  +W   L+ ++ AP+V   ++ V  +    SR    A+  ++   
Sbjct: 148 REGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSA 207

Query: 206 YDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIALTA 265
              L+    +  +     E +     S   R +TM ++    ++  V++   S+  AL A
Sbjct: 208 EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASL--ALFA 265

Query: 266 VYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGAAESIV 325
           V F  S          G    +F+ +F L+      +PL+ L +     Q  + A +++ 
Sbjct: 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLM------RPLKALTSVTSEFQRGMAACQTLF 319

Query: 326 DFLQTEVDTLHSGERHLSDNDDIEIIANDLVVLSPQGKR--LAGPLSFTLQSGKTTALVG 383
             +  +++T     ++ ++  + E+   D V  + QGK       +SF++  GKT ALVG
Sbjct: 320 GLM--DLETERDNGKYEAERVNGEVDVKD-VTFTYQGKEKPALSHVSFSIPQGKTVALVG 376

Query: 384 PSGAGKTSLINTILGFMPYQ-GSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTIRDN 442
            SG+GK+++ N    F     GS+ ++G ++R+      R+  + V QN  L   TI +N
Sbjct: 377 RSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436

Query: 443 VTLGKHN-IADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLALARAIL 499
           +          EQ+ Q  + A+A EF+E   QGLD  I +    LS GQ QR+A+ARA+L
Sbjct: 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496

Query: 500 QNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENGLL 559
           ++    +LDE T++LD  SE+ +   L E  + +T L + H+L  ++  ++ILV++ G +
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEI 556

Query: 560 VQAGHFEDLSQQSGLFATM 578
           ++ G   DL  Q G +A +
Sbjct: 557 IERGRHADLLAQDGAYAQL 575