Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., putative ABC efflux transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

 Score =  162 bits (411), Expect = 3e-44
 Identities = 142/512 (27%), Positives = 229/512 (44%), Gaps = 27/512 (5%)

Query: 78  LCSWGREIAGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFF 137
           L SW     G RC  +IRR     + D L  L P + +   +    + +      +    
Sbjct: 88  LVSW----IGERCVADIRR----AVFDHLIGLHPGFFEDNRSSEIQSRLTADTTLLQSVI 139

Query: 138 ARYLPQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKA 197
              L     + L+    + ++F  N     I ++T PLV   + L G +    SR++   
Sbjct: 140 GSSLSMFLRNALMVIGGVVLLFITNPKLTSIVVVTLPLVLAPILLFGRRVRSLSRQSQDR 199

Query: 198 LQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGASEV-FRHRTMDVLRIAFLSSAVLEFF 256
           +  +  +  + L  + T++ ++    + E      E  F      + + A+L + V+   
Sbjct: 200 VADVGSYVAETLGQIKTVQAYNHQAHDRELFADTVEAAFTVARKRITQRAWLITLVIVLV 259

Query: 257 TSISIALTAVYFGFSYI-GELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQ 315
              ++ +     G   I G ++ G   A V      + LI+   F      +G      Q
Sbjct: 260 LG-AVGVMLWVGGMDVIAGRISAGELAAFV-----FYSLIVGSAFGTLSEVIGEL----Q 309

Query: 316 LAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIE--IIANDLVVLSPQGKRLAGP--LSF 371
            A GAAE I + L      L      +         I    +V   P    +A    LS 
Sbjct: 310 RAAGAAERIAELLAARSAILPPDVAQVLPQPRASGHIELQQVVFAYPSRPTVAAVDGLSL 369

Query: 372 TLQSGKTTALVGPSGAGKTSLINTILGFM-PYQGSLTINGIELRELDHAQWRQTISWVGQ 430
           T++ G+T ALVGPSGAGK++L + +L F  P QG + ++G  + + D  Q R+  + V Q
Sbjct: 370 TIEPGQTVALVGPSGAGKSTLFDLLLRFYDPQQGRILLDGQPVTDFDPDQLRRQFALVAQ 429

Query: 431 NPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQ 488
           NP L  GT+  N+  G+      +V    + A+A EF+ Q  QG   P+ +   GLS GQ
Sbjct: 430 NPSLFRGTVEANIRYGRPEATLAEVEAAARGAHADEFIRQLPQGYQTPLGEGGIGLSGGQ 489

Query: 489 AQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSV 548
            QRLA+ARA+L +    LLDE T++LDA+SE  + + L   +  RT L + H+L  +Q  
Sbjct: 490 RQRLAIARALLVDAPILLLDEATSALDAQSEYLIQQALPSLMAGRTTLVIAHRLATVQHA 549

Query: 549 EQILVMENGLLVQAGHFEDLSQQSGLFATMLA 580
           E+I V++ G LV  G    L + S L+A + A
Sbjct: 550 ERIAVIDQGRLVAVGTHRQLIEDSPLYARLAA 581