Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., lipid A export permease/ATP-binding protein MsbA from Magnetospirillum magneticum AMB-1

 Score =  162 bits (409), Expect = 5e-44
 Identities = 130/566 (22%), Positives = 246/566 (43%), Gaps = 38/566 (6%)

Query: 42  AALLASILHQLIIEQVDKHLLIPHFFGLAALIAVRALCSWGREIAGFRCGEEIRRYIRQL 101
           A L+  +++++  E+  + LL P    +    AV+++C++G  +   + G  +   ++  
Sbjct: 49  ALLMDPVVNKIFTEKRPEFLL-PLALAVLGTFAVKSVCNYGEAVFLSKVGLRVIADMQSR 107

Query: 102 ILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQMSLSVLVPFVILAVVFPV 161
           +   L  L  A+      G   + +   +  M    +  L            ++  +F  
Sbjct: 108 LFAHLMRLDVAFFHANSTGRILSRLTNDISQMRFAVSDALTGAGKDASSVIFLIGAMFYQ 167

Query: 162 NWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSGHFYDRLQALTTIRLFDRT 221
           +W          P+  L +  +G +    +    + + +L+ +    +Q +  ++ +   
Sbjct: 168 DWRLSAWTFFIFPIAILPIRKLGRRMRKVTANTQEHMGQLTTYLEQAVQGIRVVKAYGME 227

Query: 222 TAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIALTAVYFGFSYI-GELNFGY 280
             E   +    E+ +       R+   SS ++E    I+I +  +Y G   + GE   G 
Sbjct: 228 EYEKRKVGALVEMLQDLIYKAARVRSASSPIMELLGGIAITVVILYGGTRVVNGETTPGA 287

Query: 281 YGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGAAESIVDFLQTEVDTLHSGER 340
           + + +T       L+LA   Y+P++ L       Q  + AA      L T+         
Sbjct: 288 FFSFIT------ALMLA---YRPIKSLAAMNTNLQEGLAAASRTFSVLDTQPTIFEKDG- 337

Query: 341 HLSDNDDIEIIANDLVVLSPQ------------GKRLAGPLSFTLQSGKTTALVGPSGAG 388
                      A DLVVL                K +   +   +  GKT ALVGPSGAG
Sbjct: 338 -----------AADLVVLEGNVSFEGVFFTYDGSKAVLDGIDLAVPGGKTVALVGPSGAG 386

Query: 389 KTSLINTILGFMPY-QGSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTIRDNVTLGK 447
           K++++N +  F     G + ++G ++R +  +  R  I+ V Q   L   +IR N+  G+
Sbjct: 387 KSTVLNLLPRFYDVTDGHVLVDGQDVRNVSLSSLRSKIALVSQEITLFDDSIRANIAYGR 446

Query: 448 HNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLALARAILQNGRFW 505
               DE++    ++A A +F+    +G D  + +R   LS GQ QRLA+ARA+L+N    
Sbjct: 447 FGATDEEIEAAARSAAAHDFIVSLPEGYDTVVGERGLNLSGGQRQRLAIARAMLKNAPIL 506

Query: 506 LLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENGLLVQAGHF 565
           LLDE T++LD  SE+ V   L   ++ RT + + H+L  + + + I V++ G ++++G  
Sbjct: 507 LLDEATSALDTESERQVQTALELLMRGRTTIVIAHRLSTVVNADLIHVLDKGRVIESGDH 566

Query: 566 EDLSQQSGLFATMLAANQALQAANKG 591
             L  ++G +A + A   A +A   G
Sbjct: 567 NALMAKNGTYARLYAMQFAEEAVKAG 592