Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Dickeya dianthicola ME23

 Score =  159 bits (402), Expect = 3e-43
 Identities = 136/560 (24%), Positives = 266/560 (47%), Gaps = 27/560 (4%)

Query: 33  LSSLFLVAQAA---LLASILHQLIIE---QVDKHLLIPHFFGLAALIAVRALCSWGREIA 86
           ++++ LV  AA   L+ S+L  L+ +   + D+ +L+     +  L+ +R + S+     
Sbjct: 29  VAAVALVVNAAGDTLMLSLLKPLLDDGFGKADRSVLVWMPLAIIGLMIMRGISSYISSYC 88

Query: 87  GFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALML---EQVENMHDFFARYLPQ 143
                 ++   +R+ +   +  +  ++   +  G+  + +    EQV          + +
Sbjct: 89  VAWVSGKVVMNMRRRLFSHIMGMPVSFFDQQSTGTLLSRITYDSEQVAASSSNALVTVVR 148

Query: 144 MSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSG 203
              S++  FV++   F  +W   LI +L AP+V   M +V  +    S+     + +++ 
Sbjct: 149 EGASIIGLFVLM---FWYSWQLSLILVLIAPIVSYSMRVVSKRFRSISKSMQNTMGQVTT 205

Query: 204 HFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIAL 263
                L+    + +F   T E E     S   R + M ++  + +S  V++   S+++A 
Sbjct: 206 SAEQMLKGHKEVLIFGGQTVEVERFDAVSNRMRQQGMKMVSASSISDPVVQLIASLALAF 265

Query: 264 TAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGAAES 323
             V +  S+   +     G    +F+ +F L+      +PL+ L       Q  + A ++
Sbjct: 266 --VLYAASFPSVMETLTAGTITVVFSSMFTLM------RPLKSLTNVNAQFQRGMAACQT 317

Query: 324 IVDFLQTEVDTLHSGERHLSD-NDDIEIIANDLVVLSPQGKRLAGPLSFTLQSGKTTALV 382
           +   L  E +   +G R L+    +IE    +      +   L   +S  +  GKT ALV
Sbjct: 318 LFTILDMEQEK-DTGTRVLAHAKGNIEFRQVNFTYPGKETLALKN-ISLHIPPGKTVALV 375

Query: 383 GPSGAGKTSLINTILGFMPYQ-GSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTIRD 441
           G SG+GK+++ N I  F   Q G + ++G +LR+   +  R  ++ V QN  L   TI +
Sbjct: 376 GRSGSGKSTIANLITRFYDIQAGEILLDGHDLRDYTLSSLRSQVALVSQNVHLFNDTIAN 435

Query: 442 NVTLG-KHNIADEQVTQTLQAAYAQEFVE--QQGLDYPISDRSAGLSVGQAQRLALARAI 498
           N+        + E + +  + A+A +F+   +QGLD  I +    LS GQ QR+A+ARA+
Sbjct: 436 NIAYACGDRYSREDIERAAKMAHAMDFIGRLEQGLDTVIGENGVLLSGGQRQRIAIARAL 495

Query: 499 LQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENGL 558
           L++    +LDE T++LD  SE+ +   L E  + RTAL + H+L  ++  ++ILV+E+G 
Sbjct: 496 LRDCPILVLDEATSALDTESERAIQAALDELQKNRTALVIAHRLSTIEKADEILVVEDGQ 555

Query: 559 LVQAGHFEDLSQQSGLFATM 578
           +++ G   +L  ++G +A +
Sbjct: 556 IIERGQHSELLARNGAYAQL 575