Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., SmdB family multidrug efflux ABC transporter permease/ATP-binding protein from Dickeya dianthicola ME23

 Score =  160 bits (405), Expect = 1e-43
 Identities = 143/567 (25%), Positives = 250/567 (44%), Gaps = 24/567 (4%)

Query: 28  VGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIPHFF--GLAA----LIAVRALCSW 81
           VG GVL  L++ A A +   +L    I+ +      P     GLAA    L  + AL  +
Sbjct: 25  VGAGVLL-LWVAAGAEMAGPVLVSYFIDHLVSKGEFPLMVAAGLAAGYVVLQGIAALLHY 83

Query: 82  GREIAGFRCGEEIRRYIRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYL 141
            + +   R    + + +R  ++D       A    +P G   + +    E + D +   +
Sbjct: 84  VQALMFNRVAVGVVQQLRIDVMDAALRQPLAVFDTQPVGQLISRVTNDTEVVRDLYVMVV 143

Query: 142 PQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRL 201
             +  S  +   +L  +F ++W   L+ L   P V + M +    +    R+    L  +
Sbjct: 144 GSVLRSAALIGAMLIAMFTLDWRMALVTLTIFPAVAIVMVIYQRYSTPIVRRMRSYLADI 203

Query: 202 SGHFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLRI-AFLSSAVLEFFTSIS 260
           +  F + +  ++ I+ F +     + +  AS       M  LR+  FL   +L  F+++ 
Sbjct: 204 NDGFNESISGMSVIQQFRQQVRFGKKLSEASRAHYETRMQTLRLDGFLLRPLLSLFSALV 263

Query: 261 IALTAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGA 320
           +    + FGFS +G +  G   A +     L          +PL +L T     Q AV A
Sbjct: 264 MCGLLLQFGFSSVGSVGVGILYAFINYLGRL---------NEPLIELTTQQSMLQQAVVA 314

Query: 321 AESIVDFLQTEVDTLHSGERHLSDNDDIEIIANDLVVLSPQGKRLAGPLSFTLQSGKTTA 380
            E I + +           R L       I    +     +GK +   +   +      A
Sbjct: 315 GERIFELMDGARQRYGDDVRALESG---RIDIGQVTFSYHKGKPVLHDIELHVPDRGFVA 371

Query: 381 LVGPSGAGKTSLINTILGF-MPYQGSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTI 439
           LVG +G+GK++L + ++G+ +P +G + ++   L  L H   RQ ++ V Q+P++L  ++
Sbjct: 372 LVGHTGSGKSTLASLLMGYYVPDRGEIRLDDRPLSSLSHQVLRQHVAMVQQDPVVLADSM 431

Query: 440 RDNVTLGKHNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLALARA 497
             NVTLG+ +I++E V Q L A      V    +GL   + ++   LSVGQ Q LALAR 
Sbjct: 432 YANVTLGR-DISEENVWQVLDAVQLAPLVRAMPEGLHTRVGEQGNNLSVGQKQLLALARV 490

Query: 498 ILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENG 557
           ++   R  +LDE TA++D+ +EQ + R L       T + + H+L  +   + ILV+ +G
Sbjct: 491 LVAAPRILILDEATANIDSGTEQAIQRALRLVRSHTTLVVIAHRLSTIVEADNILVLHHG 550

Query: 558 LLVQAGHFEDLSQQSGLFATMLAANQA 584
             V+ G  E L  + G +  M    QA
Sbjct: 551 KTVEQGTHEQLLTREGRYYQMYQLQQA 577