Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., Lipid A export ATP-binding/permease protein MsbA from Acinetobacter radioresistens SK82

 Score =  169 bits (429), Expect = 2e-46
 Identities = 148/585 (25%), Positives = 276/585 (47%), Gaps = 37/585 (6%)

Query: 6   QRSLNLWLKQQSKLAKRW---LAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLL 62
           ++   ++ +  S L   W   L + VG G+ +S   V+ A LL  I++ +  +       
Sbjct: 2   KQDFKVYARLLSYLKPYWGAALLVLVGFGINASTE-VSVAKLLEYIINAIQHQNQQNLNW 60

Query: 63  IPHFFGLAALIAVRALCSWGREIAGFRCGEEIRRYI---RQLILDKLRDLGPAYIKGKPA 119
            P  F +  LI  R L   G  I G+      R  I   RQ +  KL  L   Y     +
Sbjct: 61  FP--FLVIILIFFRGL---GLFIGGYYTAVISRSLIFQIRQEVFAKLLRLPAQYYLDNNS 115

Query: 120 GSWAALMLEQVENMHDFFARYLPQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAPLVPLF 179
           G   A ++  VE +    +  L  +     +   ++  +   NW   +  L+ APL+ L 
Sbjct: 116 GQITAKIMYNVEQLTAASSESLKTLVQYGFITLGLIGYLLYTNWRLTICILIFAPLIGLL 175

Query: 180 MALVGIKAADASRKNFKALQRLSGHF----YDRLQALTTIRLFDRTTAETEHMRGASEVF 235
           +     KAA   RK    +Q   G       + +     ++ F   T E E     S   
Sbjct: 176 IR----KAAKRMRKLSVQVQNTMGDINHVVQESVNGNAVVKGFGGETFEQERFYHHSNEN 231

Query: 236 RHRTMDVLRIAFLSSAVLEFFTSISIALTA-VYFGFSYIGELNFGYYGASVTLFAGLFVL 294
             R + ++ +  ++S +++   +I++++   +      +G  + G + A +T  AGL   
Sbjct: 232 LKRGLKMVIVQQMNSPIVQLIMAIAMSIIIWIALRPQVLGNTSAGEFVAYITA-AGLLA- 289

Query: 295 ILAPEFYQPLRDLGTYYHAKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIEIIAND 354
                  +P++ L       Q  + AA S+ + L    +  ++G+       +IE   N 
Sbjct: 290 -------KPIKSLTDINEKLQRGMAAAYSVFELLDMPEEK-NTGDLKPVLKGNIEF--NQ 339

Query: 355 LVVLSPQGKRLAGPLSFTLQSGKTTALVGPSGAGKTSLINTILGFMPYQ-GSLTINGIEL 413
           + +    G +     S  +++G+T ALVG SGAGK+SL+N ++ F     G + ++G ++
Sbjct: 340 VNLTYSDGSQAIYDFSLNVKAGETVALVGRSGAGKSSLVNLLVRFQEISSGKILLDGFDI 399

Query: 414 RELDHAQWRQTISWVGQNPLLLYGTIRDNVTLGKHNIADE-QVTQTLQAAYAQEFVEQ-- 470
           ++++    R  I+ V Q  +L   ++RDN+  G+   A E ++    +AAYA +F+    
Sbjct: 400 QKIELTALRSQIAMVNQQVVLFNRSVRDNIAYGQLQGASEAEIIAAAKAAYAHDFIMSLP 459

Query: 471 QGLDYPISDRSAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESI 530
           QG D  +  +   LS GQ QR+A+ARAIL+N    +LDE T++LD  SE ++ +   +++
Sbjct: 460 QGYDTILGAQGLNLSGGQRQRIAIARAILKNAPILILDEATSALDNESEHFIQKAFDKAM 519

Query: 531 QQRTALFVTHQLQPLQSVEQILVMENGLLVQAGHFEDLSQQSGLF 575
           Q+RT + + H+L  +++ ++I+VM+ G +V+ G+ ++L Q+ G +
Sbjct: 520 QERTTIVIAHRLSTIENADRIVVMDKGRIVEQGNHQELMQKHGAY 564