Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., rRNA pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score = 94.0 bits (232), Expect = 3e-24
 Identities = 78/241 (32%), Positives = 118/241 (48%), Gaps = 23/241 (9%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV----VRIDGHVVSVK 59
           KL K++A  G+GSR+++  L R+GR++        GE L  D+ V    +R+D   +   
Sbjct: 2   KLVKLIANLGYGSRKDVTQLFRSGRITDAD-----GEVLYADDVVPYGTIRVDDEPLDPP 56

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLP---KIRGSRWISVGRLDANTSGLL 116
                    L  +KP G  C+R DP   R V+D LP   ++R     +VGRLD +TSGLL
Sbjct: 57  PG-----LTLMMHKPLGVTCSRKDPG--RVVYDLLPPRYRVRTPALSTVGRLDRDTSGLL 109

Query: 117 LFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRG-VQLEDGMARFEDVMYAG 175
           LFT DG L +R++ P   V + Y   +  D+  ++      G + LE+            
Sbjct: 110 LFTDDGALLHRIISPKANVTKVYEATLAQDLRGDEGELFASGTLMLEEETTPLAPAALE- 168

Query: 176 GEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQ 235
             G  H   + ++EGR  +VRR++ + G  V  L+RV  G + L    P G W  LD  +
Sbjct: 169 VLGSRHA-RLGVSEGRYHQVRRMFAAAGNHVETLQRVSIGALTLGGLAP-GEWRALDAAE 226

Query: 236 V 236
           V
Sbjct: 227 V 227