Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., rRNA pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score = 98.6 bits (244), Expect = 1e-25
 Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 11/238 (4%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ--E 62
           L +VL++ G  SR + E  +RAGRVS++G+V      + D      ID   V+V  Q  +
Sbjct: 23  LARVLSKLGACSRSQAEQWVRAGRVSLDGRV------VRDPYHPTLIDRQQVAVDGQPVK 76

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWIS-VGRLDANTSGLLLFTTD 121
              C  +A+ KP G + +  D  GR TV+  L    G  W+  VGRLD  + GLLL + D
Sbjct: 77  SAKCVYVAFNKPRGLVVSAADEHGRATVYTTLAAA-GLPWLGPVGRLDKASEGLLLLSND 135

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
              A  + +P+  +++ Y V+V G      +  ++ G+     + +   V        N 
Sbjct: 136 TVWAAGITNPATHLDKTYHVQVSGLPDTAVLAAMLAGIDDAGDLLKARRVALLRTGEKNA 195

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
              +V++EGRNR +RRL  + G  V RL RV  G + L  +L +G W +L   +V  L
Sbjct: 196 WLEMVLDEGRNRHIRRLLAALGFDVLRLIRVSIGPLALG-ELAKGQWRQLSADEVGAL 252