Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., pseudouridine synthase from Rhodanobacter sp000427505 FW510-R12

 Score =  101 bits (252), Expect = 2e-26
 Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 17/234 (7%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGER-LEDDNAVVRIDGHVVSVKAQE 62
           ++ K ++ AG  SRRE +  + AGRV++NG+V   G + LE D   VR+DG +V  +   
Sbjct: 2   RVNKYISEAGLCSRREADEWLAAGRVTINGEVVSTGAKALEGDE--VRVDGEIVKARILA 59

Query: 63  EVICRVLAYY----KPEGELCTRHDPEGRRTV-FDRLPKIRGSRWISVGRLDANTSGLLL 117
                  A Y    KP G  CT         V F   P+    R   +GRLD ++ GL+L
Sbjct: 60  ATPAAKKAVYIALNKPVGVTCTTDQAVAGNIVDFVDHPQ----RIFPIGRLDKDSEGLIL 115

Query: 118 FTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGE 177
            T++G++ N ++      E+EYLV V   VT+E +  + +GV++   M R          
Sbjct: 116 LTSNGDIVNEILRAENHHEKEYLVAVNKAVTDEFLAGMAKGVRIHGQMTRPCRTRRIAKF 175

Query: 178 GINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
           G    F +V+ +G NR++R +  + G  V++L+RVR  ++ L    P G W  L
Sbjct: 176 G----FSIVLTQGLNRQIRLMAAAFGYRVTQLRRVRIDNVKLGHLKP-GQWRNL 224