Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  140 bits (352), Expect = 1e-37
 Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           +E++ KV+ARAG GSRRE+E  I AGRV+VNG+V             + IDG  +  + +
Sbjct: 29  AERVAKVVARAGLGSRREIEEWIEAGRVAVNGEVLTSPAVTVTPADAITIDGEPLPERER 88

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
                R+  Y+KP+G + T  DPEGR T+F+ LPK    R +SVGRLD N+ GLLL T D
Sbjct: 89  T----RLFLYHKPKGVVTTNRDPEGRTTLFEILPKGL-PRLVSVGRLDLNSEGLLLLTND 143

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G LA  L  P     R Y VR  G++ + K+  L++G+ ++       +      +G N 
Sbjct: 144 GGLARVLELPETGWLRRYRVRANGEIDQAKLDTLIKGITVDGVEYGPIEAELDRVQGANA 203

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
              V + EG+NRE+R ++ + G  V+RL RV YG   L  ++P G   E+
Sbjct: 204 WITVSLREGKNREIRNVFGALGLAVNRLIRVSYGPFQLG-EIPEGSVEEV 252