Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

 Score = 83.6 bits (205), Expect = 5e-21
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 19/246 (7%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEEV 64
           LQ +L   G G+RR    L++ G V++       G+ + D  A +  DG + +V+     
Sbjct: 3   LQDILYTQGFGTRRVCAGLVQQGHVTI------AGQAVTDPFADLDPDGLLYTVQGTPWA 56

Query: 65  ICR--VLAYYKPEGELCTRHDPEGRRTVFDRLP---KIRGSRWI-----SVGRLDANTSG 114
                 L  +KP G  C++  P    +++  LP   ++R ++       ++GRLD +T+G
Sbjct: 57  YHEKAYLMLHKPAGTECSQK-PSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTG 115

Query: 115 LLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA 174
           LLL T DG+  +++  P   V + Y V     V E ++  L+ GV L+D           
Sbjct: 116 LLLLTDDGQFIHKMGSPKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACE 175

Query: 175 GGEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLK 234
               ++    + + EG+  +V+R+  + G  V  L R R GD+ L + L  G W  L  +
Sbjct: 176 SDSPLH--LRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAE 233

Query: 235 QVNYLR 240
           +V  LR
Sbjct: 234 EVAALR 239