Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., 16S rRNA pseudouridine(516) synthase from Variovorax sp. OAS795

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 21/248 (8%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEEV 64
           LQ +L   G G+RR    LI+ G V++ GK A      +D  A +  +G + +V+  E  
Sbjct: 3   LQDILYSQGFGTRRVCAGLIQQGHVAIAGKTA------DDPFADLDPEGLLFTVQGTEWA 56

Query: 65  ICR--VLAYYKPEGELCTRHDPEGRRTVFDRLP---KIRGSRWI-----SVGRLDANTSG 114
                 L  +KP G  C++  P    +++  LP   ++R ++       ++GRLD +T+G
Sbjct: 57  YHEKAYLMLHKPAGTECSQK-PSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTG 115

Query: 115 LLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA 174
           LLL T DG+  +++  P   V + Y V     + E +V  L+ GV L+D     + V  A
Sbjct: 116 LLLLTDDGQFIHKMGSPKHHVPKVYEVTAKHPIDEAQVARLLAGVVLDDDP---KPVRAA 172

Query: 175 GGEGINH-TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDL 233
             E  +     + + EG+  +V+R+  + G  V  L R R G + L   L  G W  L  
Sbjct: 173 ACESDSPLQLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGQLVLPPDLAPGQWRWLSA 232

Query: 234 KQVNYLRE 241
           +QV  LRE
Sbjct: 233 EQVAALRE 240