Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

 Score =  115 bits (289), Expect = 1e-30
 Identities = 93/314 (29%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           ++L K ++  G+ SRRE + LI  GRV++NG    +G ++ + + V  IDG    ++++E
Sbjct: 19  KRLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVGSKVTEQDEVC-IDGK--PLRSKE 75

Query: 63  EVICRVLAYYKPEGELCT-RHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
             I   +A  KP G  CT   D  G    F    K    R   +GRLD  + GL+  T D
Sbjct: 76  RPI--YIALNKPTGITCTTERDVPGNIVDFIGHHK----RIFPIGRLDKPSDGLIFLTND 129

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G++ N+++      E+EY+VRV   +T E +R +  GV + D +     V     +   +
Sbjct: 130 GDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT----QETQY 185

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
           +F +V+ +G NR++RR+ E+ G  V +L+RVR  +I LD  +P G W  L   +V+ +  
Sbjct: 186 SFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLD-GIPNGKWRYLSEAEVSEILA 244

Query: 242 LVELRPEKETVLNMAPDAATRK----------RERTRSQKIRRAVRR-HEERISATPGRS 290
           + E     E    +A    T K          RE  +  K RR  +  H +         
Sbjct: 245 MCEDSSGTEEASRVAQSGDTIKRATDAKLFDSREANKESKARRNPKTYHGKNAQEFRHAP 304

Query: 291 GKAPARRKPGGESS 304
               A+R+P   SS
Sbjct: 305 NSKKAQRRPSSPSS 318