Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 85.1 bits (209), Expect = 1e-21
 Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L K L  A   +R+E   L+++G V+V+  V   G     + + V   G  +++     
Sbjct: 2   RLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGP-- 59

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
              R +  +KP+G +C+ H+    +T    L ++        GRLD +T+GLLL T DG+
Sbjct: 60  ---RYIMMHKPDGVVCS-HEDGFNQTALTLLDEVNIQDLHFAGRLDVDTTGLLLITDDGQ 115

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT- 182
            ++R+  P  + E+ Y V +   +  +      RG++L       E  + A  E I+ T 
Sbjct: 116 WSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELR---GERELTLPAQLEVISETE 172

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
             + I+EG+  +V+R++ + G  V  L R R G I LD+ L  G +  L  ++V
Sbjct: 173 VLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEEV 226