Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 210 a.a., 23S rRNA pseudouridine 2457 synthase from Pseudomonas putida KT2440

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 18/179 (10%)

Query: 67  RVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGELAN 126
           R++ + KP   L    D EGR T+ D +  I G      GRLD ++ GLLL T DG L  
Sbjct: 32  RLILFNKPFDVLTQFSDGEGRATLKDFID-IPGV--YPAGRLDRDSEGLLLLTNDGGLQA 88

Query: 127 RLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDG------MARFED-VMYAGGEGI 179
           R+  P  ++ + Y V+V G+ ++E+++ L  GV+L DG        R E+  ++     +
Sbjct: 89  RIADPKHKLAKTYWVQVEGEPSDEQLQRLRDGVELNDGPTLPAEARRLEEPELWPRNPPV 148

Query: 180 NHT-------FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
                       +VI EGRNR+VRR+  + G    RL RVR GD  LD  L +G W E+
Sbjct: 149 RFRKSVPTSWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGDWALD-GLEQGCWREV 206