Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score =  294 bits (752), Expect = 2e-84
 Identities = 159/327 (48%), Positives = 213/327 (65%), Gaps = 9/327 (2%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           EKLQKVLAR G GSRR++EA I  GR+ VNG  A LG+R++  +A+  +DG ++  +   
Sbjct: 17  EKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIA-VDGKLIKREEAA 75

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           E   RV+ Y KP+GE+CTR DPEGR TVFDRLP+ +  RWI++GRLD NT+GLLLFTTDG
Sbjct: 76  EATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 135

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA-GGEGINH 181
           ELANRLMHPS +++REY VRV G+V +E +  L  GV LEDG A+F D+  A GGEG NH
Sbjct: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAPGGEGFNH 195

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            ++ V+ EGRNREVRRLWESQG  VSRLKRVR+G +FL+  LP G W E+   +++ L  
Sbjct: 196 WYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGEIDILAA 255

Query: 242 LVELRPEKETVLNM-APDAATRKRERT-----RSQKIRRAVRRHEERISA-TPGRSGKAP 294
            V L+P     + + A D   R + ++     R +++R     HE   +   P R  +  
Sbjct: 256 EVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPAHEGAATGERPARQPREE 315

Query: 295 ARRKPGGESSTRNKVANQQQSSRKPRG 321
           A RKP   S+   + +  ++   KP G
Sbjct: 316 APRKPTRGSTVAERPSEMRKRPGKPDG 342