Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

 Score = 83.2 bits (204), Expect = 6e-21
 Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 11/235 (4%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L + LA     +R+ +  ++   RV V+G+V  + + L D     R++     ++A   
Sbjct: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQV--VSDPLTDVREFSRVELDEQLLQAGRP 59

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
              R L  YKP G +   HDP+  RTV D LP          GRLD NT+GL++ T DG+
Sbjct: 60  A--RYLMLYKPTGCVSATHDPQ-HRTVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDGQ 116

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRG--VQLEDGMARFEDVMYAGGEGINH 181
            + RL  P+ ++ + YLV    ++ E  V     G     ED   +   +   G     H
Sbjct: 117 WSRRLTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILG----PH 172

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
              + I EGR  +V+R++      V  L R   G I LD  L  G + EL   ++
Sbjct: 173 RARLAIVEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEI 227