Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score = 90.5 bits (223), Expect = 6e-23
 Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 21/241 (8%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVA-VLGERLEDDNAVVRIDGHVVSVKAQE 62
           +L KV+A  G  SRRE +  I  G V VNG++   LG R+ D  A + I  +    +A+ 
Sbjct: 123 RLSKVMADRGLCSRREADDWIVNGWVKVNGEIIETLGTRI-DPAAEIIISAYAKEHQAET 181

Query: 63  EVIC--RVLAY--------YKPEGELCTRHD--PEGRRTVFDRLPKIRGSRWISVGRLDA 110
             I   + + Y        Y+P   L    +  PE    +  +   +RG      GRLD 
Sbjct: 182 VTILLHKPVGYVSGQAEDGYEPAVVLVNPDNQWPEDSSGIDFKRGHLRGLA--PAGRLDI 239

Query: 111 NTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFED 170
           +++GLL+ T DG +A +L+     VE+EYLVRV G ++   +  L  G+ L+    +   
Sbjct: 240 DSTGLLVLTQDGRVARKLIGDDSSVEKEYLVRVEGQLSANGLALLNHGLSLDGVQLKPAK 299

Query: 171 VMYAGGEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWME 230
           V +   + +      V+ EGR R++RR+ E  G  V  LKR+R G I L  KLP G W  
Sbjct: 300 VSWQNEDQLR----FVLREGRKRQIRRMCELVGLHVVGLKRIRIGSINLG-KLPPGQWRY 354

Query: 231 L 231
           L
Sbjct: 355 L 355