Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  146 bits (368), Expect = 8e-40
 Identities = 119/312 (38%), Positives = 158/312 (50%), Gaps = 23/312 (7%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           E++ K LARAG  SRRE E  I  GRV+VNG        +     +V +DG    +   E
Sbjct: 52  ERIAKRLARAGLCSRREAERWIEDGRVTVNGHRLSSPACVVGPGDIVIVDG----IPLSE 107

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
               R+  Y+KP G + T  DPEGR TVFD LP+    R ISVGRLD N+ GLLL T DG
Sbjct: 108 PEKTRLWRYHKPAGLVTTHKDPEGRPTVFDHLPEGM-PRVISVGRLDLNSEGLLLLTNDG 166

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFE-DVMYAGGEGINH 181
           ELA +L  PS    R Y VRV G+V+E+ +  L  G+ + DGMA           +G N 
Sbjct: 167 ELARKLELPSNAWLRRYRVRVHGEVSEDALARLENGITI-DGMAYGPISATLDRRQGANA 225

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
              V + EG+NRE+RR+ E  G  VSRL RV YG   L   L  G   E+  K    LRE
Sbjct: 226 WLSVSLREGKNREIRRVMEYLGWPVSRLIRVSYGPFQLG-TLEEGAADEVAGK---VLRE 281

Query: 242 LV-----ELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPAR 296
            +      L+P+ ET       A  R++E+  + K R+     ++R  A   +  K    
Sbjct: 282 QMGEGKAVLKPKAET-----KSAGEREKEQRVAAKARKQKLAEDKR--AASAKKDKPYEA 334

Query: 297 RKPGGESSTRNK 308
           R+ G   + R +
Sbjct: 335 RQAGKPDAHRRR 346