Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  112 bits (280), Expect = 1e-29
 Identities = 84/305 (27%), Positives = 158/305 (51%), Gaps = 28/305 (9%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           S +L K ++ +G  SRRE +  I  G V +NGK A +G+++   + +V+++G ++  +  
Sbjct: 6   STRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGD-IVKVNGRLIEPREA 64

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
           ++++  ++A  KP G + T  D E R  + D +      R   +GRLD ++ GL+  T  
Sbjct: 65  DDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRIFPIGRLDKDSQGLIFLTNH 119

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G+L N+++      E+EYLV V   +T+E +R +  GV +   + +   V     +    
Sbjct: 120 GDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVK----KEAPF 175

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            F + + +G NR++RR+ E  G  V++L+R R  ++ L   +P G W +L   ++  L +
Sbjct: 176 VFRITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRR---AVRRHEERISATPGRSGK---APA 295
           L+E           + +A  + + + ++  I+R   A+ +  E+  A P  SGK   +P 
Sbjct: 235 LIE---------RSSSEAKPKAKAKPKTTGIKRPVVAIEKSNEK--ARPTSSGKRFTSPG 283

Query: 296 RRKPG 300
           R+K G
Sbjct: 284 RKKKG 288