Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 231 a.a., 16S rRNA pseudouridylate 516 synthase (NCBI) from Escherichia coli BW25113

 Score = 80.1 bits (196), Expect = 5e-20
 Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKV---AVLGERLEDDNAVVRIDGHVVSVKA 60
           +L K +A+    SR      IR  RV+V+G++   A      E D   V  DG+ ++ + 
Sbjct: 2   RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD---VAYDGNPLAQQH 58

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
                 R     KP+G +C+  DP+   TV   L +    +  + GRLD +T+GL+L T 
Sbjct: 59  GP----RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTD 113

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DG+ ++R+  P    E+ YLV +   V ++      +GVQL +     +  +    E I 
Sbjct: 114 DGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL---EVIT 170

Query: 181 HT-FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
            T   + I+EGR  +V+R++ + G  V  L R R G I LD  L  G +  L  +++
Sbjct: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227