Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

 Score =  382 bits (981), Expect = e-111
 Identities = 193/282 (68%), Positives = 228/282 (80%), Gaps = 6/282 (2%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV-VRIDGHVVSVK 59
           MSEKLQKVLARAGHGSRRE+E++I AGRVSV+GK+A LG+R+E    + +RIDGH++SV+
Sbjct: 1   MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
              E ICRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT
Sbjct: 61  ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
           TDGELANRLMHPSR+VEREY VRVFG V + K+R+L RGVQLEDG A F+ + ++GGEGI
Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N  + V + EGRNREVRRLWE+ G  VSRL RVRYGDI L K LPRGGW ELDL Q NYL
Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEE 281
           RELVEL PE  + +     A  + R R ++ +IRRAV+RH +
Sbjct: 241 RELVELPPETSSKV-----AVEKDRRRMKANQIRRAVKRHSQ 277