Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Erwinia tracheiphila SCR3

 Score =  104 bits (259), Expect = 3e-27
 Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 38/320 (11%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           S +L K ++ +G  SRR+ +  I  G V +NGK A +G+++   +AV +++G ++  +  
Sbjct: 6   STRLNKYISESGICSRRDADRYIEQGNVFINGKRASVGDQVHVGDAV-KVNGQLIEARDA 64

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
           E+++  VL   KP G + T  + E R  + D +      R   + RLD ++ GL+  T  
Sbjct: 65  EDLVLIVLN--KPVGIITTMEEGE-RDNISDFVN--HSKRVFPIDRLDKDSQGLIFLTNH 119

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G+L N+++      E+EY+V V   +T+E +  +  GV +   + +   V     +    
Sbjct: 120 GDLVNKILRAGNNHEKEYVVTVNKLITDEFIAGMGAGVPMLGTVTKKCKVK----KEAPF 175

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            F + + +G NR++RR+ +  G  V++L+R R  ++ L K LP G W +L   ++  L  
Sbjct: 176 VFRITLVQGLNRQIRRMCKHFGYEVTKLERTRIMNVSL-KGLPLGEWRDLTDDELTELFR 234

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKPGG 301
           L+E         N + +A T K+ + R                AT   S  A +  K  G
Sbjct: 235 LLE---------NSSSEAPTAKKTKPR---------------PATAKNSSGAKSVDKASG 270

Query: 302 ESSTRNKVANQQQSSRKPRG 321
            S+ R + A   Q  RK +G
Sbjct: 271 NSTARKRFA---QPGRKKKG 287