Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Erwinia tracheiphila SCR3

 Score =  381 bits (978), Expect = e-110
 Identities = 193/288 (67%), Positives = 228/288 (79%), Gaps = 6/288 (2%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV-VRIDGHVVSVK 59
           MSEKLQKVLARAGHGSRRE+E +I AGRVSV+GK+A LG+R+E   A+ +RIDGH+VS+ 
Sbjct: 1   MSEKLQKVLARAGHGSRREIETMISAGRVSVDGKLAGLGDRIEPSKALKIRIDGHLVSIA 60

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
              E +CRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT
Sbjct: 61  ESTEDVCRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
           TDGELANRLMHP R+VEREY VRVFG + +EK++ L RGVQLEDG A F+ + ++GGEGI
Sbjct: 121 TDGELANRLMHPGREVEREYAVRVFGQIDDEKLKQLSRGVQLEDGPAAFKTLKFSGGEGI 180

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N  + V + EGRNREVRRLWES G  VSRL R RYGDI L K LPRGGW ELDL  VNYL
Sbjct: 181 NQWYNVTLTEGRNREVRRLWESVGVQVSRLIRTRYGDIDLPKGLPRGGWTELDLTPVNYL 240

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATP 287
           RELV L+PE  + + +  D     R RT++ +IRRAV+RH +  S  P
Sbjct: 241 RELVGLQPETVSKVPVEKD-----RRRTKANQIRRAVKRHSQVTSRRP 283