Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., pseudouridine synthase from Enterobacter asburiae PDN3

 Score =  381 bits (979), Expect = e-110
 Identities = 198/292 (67%), Positives = 231/292 (79%), Gaps = 8/292 (2%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV-VRIDGHVVSVK 59
           MSEKLQKVLARAGHGSRRE+EA+I AGRVSV+GK+A LG+R+E    + +RIDGH++SVK
Sbjct: 1   MSEKLQKVLARAGHGSRREIEAIIEAGRVSVDGKIATLGDRVEIVPGLKIRIDGHLISVK 60

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
              E ICRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT
Sbjct: 61  ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
           TDGELANRLMHPSR+VEREY VRVFG V E K+R+L RGVQLEDG A F+ + + GGEGI
Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDENKLRDLSRGVQLEDGPAAFKTIKFTGGEGI 180

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N  + V + EGRNREVRRLWE+ G  VSRL RVRYGDI L K LPRGG+ ELDL Q NYL
Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDILLPKGLPRGGYTELDLTQTNYL 240

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSG 291
           RELV L PE  + +     A  + R R ++ +IRRAV+RH +  S+   RSG
Sbjct: 241 RELVGLTPETTSKV-----AVEKDRRRMKANQIRRAVKRHSQVSSSR--RSG 285