Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Escherichia coli ECRC62

 Score =  115 bits (287), Expect = 2e-30
 Identities = 84/304 (27%), Positives = 157/304 (51%), Gaps = 25/304 (8%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           S +L K ++ +G  SRRE +  I  G V +NGK A +G++++  + VV+++G ++  +  
Sbjct: 6   SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGD-VVKVNGQLIEPREA 64

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
           E+++  ++A  KP G + T  D E R  + D +      R   +GRLD ++ GL+  T  
Sbjct: 65  EDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTNH 119

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G+L N+++      E+EYLV V   +T+E +R +  GV +   + +   V     +    
Sbjct: 120 GDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVK----KEAPF 175

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            F + + +G NR++RR+ E  G  V +L+R R  ++ L   +P G W +L   ++  L +
Sbjct: 176 VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFK 234

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERIS-----ATPGRSGKAPAR 296
           L+E         N + +A  + + + ++  I+R V + E+        A+ G+   +P R
Sbjct: 235 LIE---------NSSSEAKPKVKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGR 285

Query: 297 RKPG 300
           +K G
Sbjct: 286 KKKG 289