Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Dickeya dianthicola ME23

 Score =  384 bits (987), Expect = e-111
 Identities = 193/301 (64%), Positives = 234/301 (77%), Gaps = 6/301 (1%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV-VRIDGHVVSVK 59
           MSEKLQKVLARAGHGSRRE+E++I AGR+SV+GK+A LG+R+E   A  +R+DGHVVSV+
Sbjct: 1   MSEKLQKVLARAGHGSRREIESMIEAGRISVDGKIATLGDRVEVTRATKIRLDGHVVSVR 60

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
             EE +CRVL YYKPEGELCTR DPEGR TVFDRLP+I+G RW++VGRLD NTSGLLLFT
Sbjct: 61  ETEETVCRVLMYYKPEGELCTRSDPEGRPTVFDRLPRIQGYRWVAVGRLDVNTSGLLLFT 120

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
           TDGELANRLMHPSR+VEREY VRVFG+V ++K+R L +GVQLEDG A F  + Y GGEG+
Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGEVGDDKIRQLSKGVQLEDGPAAFRSIRYQGGEGL 180

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N  + V + EGRNREVRRLWE+ G  VSRL RVRYGDI L K +PRGGWME+ L  VNYL
Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIQLPKGVPRGGWMEMGLTDVNYL 240

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKP 299
           RELV+L PE  + L        R+R R ++ +IRRAV+RH +   +    SG+  A ++ 
Sbjct: 241 RELVQLTPETVSKL-----PVERERRRVKANQIRRAVKRHSQVGVSNRPASGRRSAPKRN 295

Query: 300 G 300
           G
Sbjct: 296 G 296