Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., 16S rRNA pseudouridine(516) synthase RsuA from Dickeya dianthicola ME23

 Score = 84.3 bits (207), Expect = 2e-21
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 19/239 (7%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGE-RLEDDNAVVRIDGHVVSVKAQE 62
           +L K L++    SR  +   +RA RV+VNG+V   G  +L  D+ V   D +V+    ++
Sbjct: 2   RLDKFLSQQLGISRSLIVRELRAQRVTVNGEVVKSGAFKLLPDHEVT-FDDNVL----EQ 56

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           +   R     KP+G +C+  DP+   T+   + +   ++  + GRLD +TSGL+L T DG
Sbjct: 57  QNGPRYFMLNKPQGYVCSTDDPD-HPTILYFIDEPVANKLHAAGRLDIDTSGLVLLTDDG 115

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGM-----ARFEDVMYAGGE 177
           + ++R+  P    E+ YLV +   +  +   N   GVQL         A  E V      
Sbjct: 116 QWSHRITSPKHHCEKTYLVTLEQPLAPDTADNFQAGVQLHGEKDLTRPATLEPVS----- 170

Query: 178 GINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
              +   + I+EGR  +V+R++ + G  V  L R R G I LD  L  G +  L  ++V
Sbjct: 171 --EYQVRLTISEGRYHQVKRMFAAVGNHVVALHRERIGAITLDDALEPGEYRPLTPEEV 227