Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., pseudouridine synthase from Bacteroides stercoris CC31F

 Score =  131 bits (330), Expect = 3e-35
 Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 9/238 (3%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAV-LGERLEDDNAVVRIDGHVVSVKAQE 62
           +L K LA AG  SRRE +  I AG VSVNG+V   LG +++  + V +     VS++ + 
Sbjct: 254 RLNKFLANAGVCSRREADEFITAGVVSVNGEVVTELGTKIKRGDEV-KFHDQTVSIERKI 312

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
            V+       KP+  + T  DP+ RRTV D +      R   VGRLD NT+G+LL T DG
Sbjct: 313 YVLLN-----KPKDTVTTSDDPQARRTVMDLVKGACDERIYPVGRLDRNTTGVLLLTNDG 367

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT 182
           +LA++L HP    ++ Y V +  ++T+  +  +  G+QL+DG  + + + Y   +     
Sbjct: 368 DLASKLTHPKYLKKKIYHVHLDKNLTKADMEQIAAGIQLDDGEIQADAISYT-DDFKKDE 426

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             + I+ G+NR VRR++ES G  V +L RV +  +   K L RG W  L  ++VN+LR
Sbjct: 427 VGIEIHSGKNRIVRRIFESLGYKVVKLDRVFFAGL-TKKGLRRGEWRYLTEQEVNFLR 483