Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., pseudouridine synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 86.7 bits (213), Expect = 6e-22
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 20/238 (8%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGK-VAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           ++ K L + G  SRRE + LI  G VS++G+ ++  G +++    +   D    ++    
Sbjct: 14  RVNKWLGQTGVCSRREADTLIANGLVSIDGETISDAGRKIQPGETLTLNDTAQAALATG- 72

Query: 63  EVICRVLAYYKPEGELCTRHDP---------EGRRTVFDRLPKIRGSRWISVGRLDANTS 113
                 L  +KP G +  + DP         +    V +     R +    +GRLD ++ 
Sbjct: 73  ----MTLVLHKPVGYVSGQPDPGKIPAVRLLKTPNRVGEGETPARDASLPPIGRLDEDSR 128

Query: 114 GLLLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMY 173
           GLLL ++DG +A  ++ P+ ++++EYLV V G +TE K+  L  G+ L D   +   V  
Sbjct: 129 GLLLLSSDGVVAKAVIGPASELDKEYLVVVEGQITEGKLSKLRHGLSLNDKPLKPARVTQ 188

Query: 174 AGGEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
              + +      V+ EG+ R++RR+ E  G  V  L R R G + L   LP G W  L
Sbjct: 189 IEPQRLR----FVLTEGKYRQIRRMCELVGLEVVDLYRTRIGPLVLG-DLPEGRWRHL 241