Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., pseudouridine synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  144 bits (363), Expect = 5e-39
 Identities = 124/340 (36%), Positives = 164/340 (48%), Gaps = 31/340 (9%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           +E++ K +ARAG  SRRE+E LI  G+V+VNG++      L   + V+ +DG  +     
Sbjct: 96  AERIAKTMARAGIASRREVERLIGLGKVAVNGRILDTPATLVTRDDVITVDGKPIG---- 151

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
                RV  Y+KP G L +  DP GR TVFD LP     R ISVGRLD  T GLLL T D
Sbjct: 152 STQATRVWRYHKPAGLLTSHSDPTGRPTVFDALPAGL-PRVISVGRLDLATEGLLLLTND 210

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMA----------RFEDV 171
           GEL+  L  PS  + R+Y  R  G +T+E++  L  GV + DG++            E  
Sbjct: 211 GELSRALELPSTSLVRQYRARARGKITQEQLDALKDGV-VVDGVSYGPIEAKLDKAKESK 269

Query: 172 MYAGGEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
              G    N    V I EG+NREVR++ ES G TV+RL R+ YG   LD  LP G   E+
Sbjct: 270 SEDGKAPANLWISVSITEGKNREVRKVLESVGLTVNRLIRLAYGPFRLD-VLPIGSVEEV 328

Query: 232 DLKQVNYLRELVE--LRPEK----ETVLNMAPDAATRKRE---RTRSQKIRRAVRRHEER 282
             +    +REL+   +RPE      TV   AP    R      + RS        R   R
Sbjct: 329 GPR---VIRELLADYIRPENLPTGNTVETPAPIPGRRVSTPIVKGRSGSAMSDPSRKPSR 385

Query: 283 ISATPGRSGKAPARRK--PGGESSTRNKVANQQQSSRKPR 320
           + A       A  RR+  P  E   +     +   S KPR
Sbjct: 386 VRAAETAQADAVERRERPPKKEGWAKAAPKFEHSKSFKPR 425