Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., Ribosomal large subunit pseudouridine synthase F from Alteromonas macleodii MIT1002

 Score =  103 bits (258), Expect = 3e-27
 Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 9/241 (3%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           ++L K ++  G  SRRE + LI   RV+VN +   LG ++   + V ++DG VV   A +
Sbjct: 7   KRLNKYISDTGLCSRREADKLIEQNRVTVNNQPPELGTKVGPGDTV-KVDGKVVGAVASD 65

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           +     + Y KP G  CT  +   +  + D +      R   VGRLD  + GL++ T+DG
Sbjct: 66  KSDRVYIVYNKPIGITCTT-ERHVKGNIIDAIG--HKERIFPVGRLDKPSEGLIILTSDG 122

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT 182
           ++ N+++      ++EY V V   ++E  V  + RGV +   + +   V   G     +T
Sbjct: 123 DIVNKILRAENAHDKEYEVTVNQPISERFVNRMSRGVPILGTVTKPCVVKPTG----KNT 178

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLREL 242
           F +++ +G NR++RR+ E  G  V++LKR R   + L    P G W  L  +++  ++  
Sbjct: 179 FTIILTQGLNRQIRRMCEFLGYEVTKLKRTRIMHLELGSLKP-GQWRNLTSRELTIMQNA 237

Query: 243 V 243
           V
Sbjct: 238 V 238