Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Ribosomal large subunit pseudouridine synthase B from Alteromonas macleodii MIT1002

 Score =  316 bits (809), Expect = 5e-91
 Identities = 170/304 (55%), Positives = 214/304 (70%), Gaps = 12/304 (3%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           M+EKLQKVLA  G GSRRE+E  I  GRVSV+G  A LG+R+ D  A +R+DGH++S + 
Sbjct: 1   MTEKLQKVLANQGLGSRREMERWIEEGRVSVDGTKATLGDRV-DHTAQIRVDGHLLS-RQ 58

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
            E+ ICRVL Y KPEGELC+RHDPEGR TVFDRLP IR  RWI+VGRLD NTSGLLLFT 
Sbjct: 59  TEQPICRVLMYNKPEGELCSRHDPEGRDTVFDRLPAIRLGRWITVGRLDMNTSGLLLFTN 118

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDV------MYA 174
           DGELANRLMHP  +VEREY VRVFG+VT + +  L +GV+LEDG A+F  +       +A
Sbjct: 119 DGELANRLMHPKCEVEREYAVRVFGEVTGKTLHTLQKGVELEDGEAKFLTISGAPTPQHA 178

Query: 175 GGEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLK 234
             E +N  + V + EGRNREVRRLWESQG  VSRL RV+YG I L K+LP+G W+EL L+
Sbjct: 179 EDESMNRWYNVTLKEGRNREVRRLWESQGVQVSRLIRVKYGPIELQKRLPQGAWVELGLE 238

Query: 235 QVNYLRELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAP 294
            VN LR  V+L  E +T++N+       K +  R  ++RR+V++H+ R      +    P
Sbjct: 239 DVNALRSHVQLPDETQTMVNVRQG----KLDHARLSRMRRSVKKHKVRKQQGLNKRAGRP 294

Query: 295 ARRK 298
           A+RK
Sbjct: 295 AKRK 298