Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ribosomal large subunit pseudouridine synthase B from Agrobacterium fabrum C58

 Score =  128 bits (321), Expect = 5e-34
 Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 12/232 (5%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVA---VLGERLEDDNAVVRIDGHVVSVK 59
           E++ K++ARAG  SRR++E +I  GRVS+NG +    V+   L D    + +DG  + ++
Sbjct: 57  ERISKIMARAGVASRRDVERMIMEGRVSLNGVLLDTPVVNATLSDK---IEVDG--MPIR 111

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
             E    R+  Y+KP G + T  DPEGR TVFD LP     R +S+GRLD NT GLLL T
Sbjct: 112 GAERT--RLWLYHKPAGLVTTNSDPEGRPTVFDNLPG-ELPRVLSIGRLDINTEGLLLLT 168

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
            DG L+  L  P+    R Y VR  G+V +  +  L  G+ ++  +    D      +G 
Sbjct: 169 NDGGLSRVLELPTTGWLRRYRVRAHGEVDQAALDKLKDGIAVDGVLYGAIDATLDRTQGH 228

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
           N    + + EG+NRE++ +  + G  V+RL R+ YG   L   LP G  +E+
Sbjct: 229 NVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLG-DLPEGKVLEV 279