Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., Ribosomal large subunit pseudouridine synthase B from Acinetobacter radioresistens SK82

 Score =  294 bits (752), Expect = 2e-84
 Identities = 158/300 (52%), Positives = 204/300 (68%), Gaps = 6/300 (2%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           MSEKLQKVLAR G GSRR +E +I AGRVSVNG+VA +GER+E  + + RIDG  V  + 
Sbjct: 1   MSEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRVAQVGERIEPGDEL-RIDGRKVQFQI 59

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
           ++E+  RVL YYKPEGE+C+R+DPE R TVFD LP I   RW+ VGRLD N++GLLLFT 
Sbjct: 60  EDEIRRRVLIYYKPEGEICSRNDPESRPTVFDHLPTIANDRWVMVGRLDINSTGLLLFTN 119

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DGELANRLMHPS ++EREY VRV G+VT +  +N++ GV L+DG A+FE     GG+GIN
Sbjct: 120 DGELANRLMHPSNEIEREYAVRVMGEVTPQIRQNMLNGVVLDDGPAKFESFSEIGGDGIN 179

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             + VV+ EGRNREVRR++ESQG  VSRL R RYG + L ++L  G W+ELD   ++ L 
Sbjct: 180 RWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWIELDKADIDNLT 239

Query: 241 ELVELRPEKETVL-NMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKP 299
           + VEL+P + T L  MA     R  E+  + +    +R+       T     +  A RKP
Sbjct: 240 KSVELKPRQGTGLYGMAKRRTERMAEKPMAARRGGYLRQQRRENEGTE----QTAAPRKP 295