Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., Ribosomal small subunit pseudouridine synthase A from Acinetobacter radioresistens SK82

 Score = 98.6 bits (244), Expect = 1e-25
 Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 12/234 (5%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEEV 64
           L+K+L   G GSR+  + LI++G +S+N ++     + + D      + H    + +E+V
Sbjct: 3   LEKILQSQGFGSRKYCQQLIKSGAISINHEICA-DTKAKFDLKNFTFEVHGEEFEYREKV 61

Query: 65  ICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWIS-VGRLDANTSGLLLFTTDGE 123
               +A  KP+G  C+ H  +   +VFD       +R I  VGRLD +T+GLLL T DG+
Sbjct: 62  Y---IALNKPQGYECS-HQAQYHFSVFDLFDPALLNRGIQCVGRLDQDTTGLLLLTDDGQ 117

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQL-EDGMARFEDVMYAGGEGINHT 182
               L HP + V + Y +     +T E++R L +GV+L  DG+ +  ++        +H 
Sbjct: 118 FLQALTHPRKHVAKVYDLITVDPITPEQIRLLEQGVELRNDGIFKASNIKQTS----SHQ 173

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
             + I++G   +V+R+  + G  V +L R + G++ L   L  G W  LD  ++
Sbjct: 174 LSLAIHQGVYHQVKRMLAAVGNKVEKLHRSKIGELEL-PMLAEGEWTYLDQTEI 226