Pairwise Alignments

Query, 323 a.a., tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., tRNA (mo5U34)-methyltransferase from Alteromonas macleodii MIT1002

 Score =  394 bits (1011), Expect = e-114
 Identities = 185/324 (57%), Positives = 239/324 (73%), Gaps = 6/324 (1%)

Query: 4   FANVYQQIAQHPQLQLWLNTLPQQLTDWQ-AKQHGDLDRWMRNLKKIPVGQPEVIDLKNA 62
           F + Y+ +   P L  WL TLP Q+  WQ   +HG+ D+W R L K+P   P  +DL ++
Sbjct: 9   FTDCYKSLIDSP-LSHWLQTLPAQMETWQQTAKHGEFDKWCRLLSKLPTTSPSCVDLASS 67

Query: 63  VAAHNHQPLAQGEQKKLEAVLKTFHPWRKGPYHLHGIHIDTEWRSDWKWDRLLPHISPLK 122
           V+      + +  QK++E +LK F PWRKGP++LHGIHIDTEWRSDWKWDR+ PHIS LK
Sbjct: 68  VSIGTENDVDEYVQKQIEGLLKQFMPWRKGPFNLHGIHIDTEWRSDWKWDRVAPHISSLK 127

Query: 123 NRLVLDVGCGNGYHMWRMLGEGAQQVFGIDPSELFLIQFEAVRKLLGDD----QRVHLLP 178
           +R VLDVGCG+GYHMWRMLGEGA  V GIDP++LFLIQF A+++ +       + +H LP
Sbjct: 128 DRNVLDVGCGSGYHMWRMLGEGANNVIGIDPTQLFLIQFHAIKQFISKSSAPSENIHFLP 187

Query: 179 LGIEQMPELNAFDTVFSMGVLYHRRSPLDHLLQLKNQLVAGGELILETLVVEGDEHTVLV 238
           +GIE M  L AFDTVFSMGVLYHR+ P+  L QLK+QL  GGEL+LETLVV+GDE+TVL+
Sbjct: 188 MGIEDMQPLRAFDTVFSMGVLYHRKDPMAFLQQLKDQLRKGGELVLETLVVDGDENTVLM 247

Query: 239 PFDRYAQMRNVYFFPSALALKVWLEKTGFVDVRIVDENITSLGEQRTTEWMTHNSLPDYV 298
             +RYAQMRNV+F PS  AL VWL + GF ++R+VD N T+L EQR T WM   SL D++
Sbjct: 248 AGERYAQMRNVWFLPSTAALSVWLGRLGFENIRVVDINHTTLDEQRATPWMETQSLKDFL 307

Query: 299 DPQDPSKTIEGYPAPRRAILIAKK 322
           DP+D ++TIEGYPAP+RA+++A K
Sbjct: 308 DPEDITRTIEGYPAPQRAVIVANK 331