Pairwise Alignments

Query, 284 a.a., transcriptional regulator HexR from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Transcriptional regulator RpiR in protein degradation cluster from Variovorax sp. SCN45

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 17/263 (6%)

Query: 5   EKIQKNLENFSKSERKVAEVIMASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDTKGFP 64
           ++I + L   ++S R+VA+ ++  P       I  LA +  VS  T NRF R L+  G+ 
Sbjct: 14  QRIAQALPRLTRSHRQVADYVLEHPLQVATLPIDELAAVVGVSVATANRFARALEFDGYA 73

Query: 65  DFKLHLAQSLANGTPYVNR---NVEEDDGPDAYTHKIFESTMACLDVAKNSLDPVQINRA 121
            F+  L +        V R   N+E             + +   ++  + +LD      A
Sbjct: 74  TFRAELVRGFEPLVAPVERMRGNLERPTTVAEVFATALDESRRNIEATRQTLDYAACEAA 133

Query: 122 VDLLTQAKRISFFGLGASSAVA------RDAQNKFIRFNIPISCFEDIVMQRMSCINCTD 175
           V+ + +A+ I   G GAS+ +A       D     +R    +S    +     + ++   
Sbjct: 134 VERIGKARSIYIAGFGASAWLAGLLQHGLDGSCNDVRL---LSSVSGVTHSARTLMHAGP 190

Query: 176 NDVIVLISHTGRTKSQVEIANLARENGATVIAITAK-DSPLDKASSLSICLDVPEDTDVY 234
            D+ + ++        V +A +AR  G  ++A+T +  SPL  A    + L    +T  Y
Sbjct: 191 QDLFIGLTFPRYLTDTVALAQIARGQGCALLALTDRPSSPL--APLADVALYCQTETS-Y 247

Query: 235 MPMASRVVQMTVIDVLATGFTLR 257
            P     V + +I+ L +   LR
Sbjct: 248 RPNCETSV-LALIEALTSAVALR 269